Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0445 ATGGGTGGATCCATTTCAAAACGGCGTAGTGGGAGGCAACGTTCATATTCAAGGACTAGTTCACACACTTGGAGTTACCCTCCTCCTCCTCAAGCACCCTACGCACAACAAAGCCAAGATCATTTGCCTTACGAGACTCCATCTCAAACCTATGGTGGTGCTCGTGCACCTGAATCGAAAAAGAGGTTGGAGAGGAAGTATTCAAAGATAGATGACAACTATGTTAGCCTGGATCAGGTAACCGAGGCTCTAGCAGGTGCTGGTTTAGAGTCTTCCAATCTAATTGTTGGTATTGACTTCACAAAGAGCAATGAGTGGACAGGTGCAAGATCATTCCAAAGGAGAAGCCTGCATCATATCGGTCATGAACAAAATCCGTATGAGCAGGCAATATCAATCATTGGAAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGATTTGGAGATGCGTCAACCCATGACCAGGAAGTTTTTAGTTTTTATCCGGATGAGAGATTTTGTCAAGGATTTGAAGAAGTTTTGAGACGGTACAGGGAATTGGTTCCTGAATTAAGGCTTGCAGGGCCAACATCATTTGCCCCAATCATTGAAATGGCAATCACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTCTTAGTGATAATAGCAGACGGACAGGTGACAAGAAGTGTTGATACTGAGAGAGGGCAGCTAAGCACTCAGGAAAAACAAACTGTTGAAGCTATGGTGAAAGCAAGTCAATATCCCCTGTCAATTATATTAGCTGGAGTTGGAGATGGGCCATGGGACATGATGAAAGAATTTGATGATAACATACCAGCTCGGACCTTTGATAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAACATGGATCGATCCAGGAAAGAAACAGAATTTGCCCTTGCTGCGTTGATGGAAATACCCTCTCAGTACAAGGCAACGTTGGAACTTAATATACTGGGTGCTCGTAGAGGGAAAGCTATAGACAGGGTTCCTCTTCCCCCACCTCTGTATGTTGCTGCAACTGTCAATGCCCCAAAACCCTCCCGTTCAAGCAATTTTCGTCCTAGTGCACCATCTGACAGACATCGTGATACTGGCACAAATCGTCCCGCAAGTTCTGCTTCTGATAATCATGATTGTCCAATTTGCCTCTCTGAACCTAAGAATATGGCCTTTGGTTGCGGCCATCAGACTTGCTGTGAGTGCGGACAAGATCTGGAGACATGCCCTATTTGCAGGAGTACCATAGATACTCGAATAAGACTTTATTAG 1302 0.4378 MGGSISKRRSGRQRSYSRTSSHTWSYPPPPQAPYAQQSQDHLPYETPSQTYGGARAPESKKRLERKYSKIDDNYVSLDQVTEALAGAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLRRYRELVPELRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQLSTQEKQTVEAMVKASQYPLSIILAGVGDGPWDMMKEFDDNIPARTFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATLELNILGARRGKAIDRVPLPPPLYVAATVNAPKPSRSSNFRPSAPSDRHRDTGTNRPASSASDNHDCPICLSEPKNMAFGCGHQTCCECGQDLETCPICRSTIDTRIRLY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0445 433 CDD RING-HC_RGLG_plant 390 433 IPR045317 GO:0061630|GO:0070534
Lele18g0445 433 ProSiteProfiles Zinc finger RING-type profile. 390 423 IPR001841 -
Lele18g0445 433 PANTHER COPINE FAMILY PROTEIN 1 30 410 - -
Lele18g0445 433 MobiDBLite consensus disorder prediction 352 387 - -
Lele18g0445 433 Pfam Zinc finger, C3HC4 type (RING finger) 387 428 - -
Lele18g0445 433 MobiDBLite consensus disorder prediction 1 60 - -
Lele18g0445 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 433 IPR013083 -
Lele18g0445 433 SUPERFAMILY vWA-like 93 275 IPR036465 -
Lele18g0445 433 Pfam Copine 116 329 IPR010734 -
Lele18g0445 433 SUPERFAMILY RING/U-box 385 429 - -
Lele18g0445 433 SMART VWA_4 91 294 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0445 Lele-ChrLele18 2610913 2613540 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0445 18 2610913 2613540 Lele19g0464 19 2649033 2651647 hybridization
Lele18g0445 18 2610913 2613540 Lele20g0986 20 15876415 15879043 hybridization