Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0499 ATGGGCTCCGACAAGGATAACTTCAGCATGGCAGATCTCAGCTCTGCTCTTAATGAGGAGAATCGAGCGGACCTAGTCAATGCTCTCAAGAATAAGATCCAGAGTCTGGCTGGGCGGCACACGGATGTTCTCGAGAGTCTGACACCTAATGTCAGGAAGCGCGTTGAGGGTCAACATGATGAATTAGAAGCGAAATTTTTTGAGGAGAGAGCAGCTCTTGAAGCCAAATACCAAAAATTGTATCAACCATTGTATACAAAGCGGTATGATATTGTAAATGGTGTTGCTGAAGTGGAAGTAGTAGCAAATGAAACTGCAGCTGATACAGAAGAGGATAAAGAGAAAGGCGTGCCTGCTTTCTGGCTCACTGCCATGAAAAATAACGAAGTGTTAGCTGAGGAGATTTCTGAGCGAGATGAAGGTGCTCTCAAGTGTCTCAAAGATATTAAATGGAGCAGGATAGAAAGTCCCAAAGGATTTAAGCTTGAGTTTTACTTCGATACTAATCCTTATTTTAAGAATTCTGTCTTGACAAAAACTTATCATATGATTGATGAAGATGAACCTATTCTGGAGAAAGCAATTGGCACGGAAATTGAATGGTACCCTGGCAAGTGCTTGACCCAGAAGCTGCTCAAGAAAAAGCCCAAGAAGGGTTCAAAGAATGCTAAACCAATTACTAAAACTGAAAATTGTGAAAGTTTCTTCAATTTTTTCAACCCACCACAGGTCCCTGAAGATGATGAAGACATTGATGAAGATTTGGCCGAGGAACTTCAGAACCAGATGGAACAAGACTATGATATTGGGTCAACAATAAGAGACAAGATTATTCCCCATGCTGTATCATGGTTTACTGGGGAGGCCATTCAAGGAGAGGAGTTTGGAGACCTAGAGGATGATGAAGATGATGACATTGAAGACGAAGATGATGAAGAGGAAGAGGATGATGAGGATGAGGATGAAGACGACGACGATGAAGAGGAAGAACAAACCAAGAGCAAAAAGAAGTCATCAGGCCACAAGCTGAGATTTTGCTGTGGATCTGATGCTGGTGGTGCTGAGAATGTCAATGTGGGTGTCAAGCAGTTTTTGGTGGTATTCGGAGGTAGCTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAAGAAGAAGGAGAAGGGAAGGGATCAGAATCATGGAGACTCCACAGCAAGGAGTGGTGAAGAAGAAGGAGACGAGGGGTCGCAAACCCAAGCCCAAGGACGACAAGAAGGACGACCAGCACCAACATTCCAAGACCCCTAAAGAGCACAAGAAATCTCACCCTCCTCCCTCCGTCGACGACAAGTACACCCAGTGGAAGTCCCTCGTCCCTGTCCTCTATGACTGGCTCGCTAATCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACCGATGGCAGCGTTCCGAACACTCTTGTCATCGCAAACTGTGAGGTTGTGAAACCTAGGGTTGCAGCTGCAGAGCACATCTCACAGTTTAATGAGGAGACACGTTCACCATTTGTGAAGAAGTATAAGACCATCATACATCCGGGAGAGGTTAATAGAATTCGGGAATTGCCAACAAATTCTAAGATAGTAGCTACTCATACAGATAGCCCTGATGTTCTCATTTGGGATATTGAAACTCAGCCCAATCGTCATGCTGTCCTTGGAGCCACAAACTCTCGCCCAGATCTGATATTGACTGGACATCAAGACAATGCTGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTGCTTTCTGGAGGAAAGGACAAATCAGTGGTTTTGTGGAGTATTCAGGACCATATATCATCAGCTGCCACTGACCCAAAATCTAGTGAGTCAAAACAAAACTCTAAATCTGGGGAAGGCAATGACAAAACTGCTGATGGGCCATCTGTTGGACCACGAGGCATCTTTCATGGGCATGAGGATACCGTTGAAGATGTGACTTTTTGTCCTTTTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCGTGTCTCATATTATGGGACGCACGTGTTGGCTCTAGTCCTGTGGTGAAGGTTGAAAAGGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCAATGATGTTAATCTTATTCTCACTGGGTCAGCAGATAATTCTGTTCGCATGTTCGACCGACGTAATCTTACCTCCAATGGAGTAGGGTCACCTATCCATAAATTTGAGGGTCACAAAGATGCTGTTCTCTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCTGCAGAAGATGGTCTCTTGAACATTTGGGATTATGATAAGATTGGTAAAAAAACAGAACGACCAGGAAAATCACAAAGTTCTCCTGGTTTGTTGTTCCAACATGCCGGCCATAGAGACAAGGTTGTTGACTTCCACTGGAACGCATATGATCCATGGACAATTGTTAGCGTGTCTGACGACTGTGATAGTACTGGTGGAGGTGGAACATTGCAGATATGGCGTATGAGCGACTTGATCTACCGACCGGAAGAGGAGGTTTTGGCAGAGCTTGAGAAATTTAAGGCCCATGTTGTGGAATGCGCCTCCAAGTCTGAAAAGTGA 2673 0.4501 MGSDKDNFSMADLSSALNEENRADLVNALKNKIQSLAGRHTDVLESLTPNVRKRVEGQHDELEAKFFEERAALEAKYQKLYQPLYTKRYDIVNGVAEVEVVANETAADTEEDKEKGVPAFWLTAMKNNEVLAEEISERDEGALKCLKDIKWSRIESPKGFKLEFYFDTNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTENCESFFNFFNPPQVPEDDEDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQGEEFGDLEDDEDDDIEDEDDEEEEDDEDEDEDDDDEEEEQTKSKKKSSGHKLRFCCGSDAGGAENVNVGVKQFLVVFGGSSERERERERESRRRRRREGIRIMETPQQGVVKKKETRGRKPKPKDDKKDDQHQHSKTPKEHKKSHPPPSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEETRSPFVKKYKTIIHPGEVNRIRELPTNSKIVATHTDSPDVLIWDIETQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHISSAATDPKSSESKQNSKSGEGNDKTADGPSVGPRGIFHGHEDTVEDVTFCPFSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPNDVNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEGHKDAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKIGKKTERPGKSQSSPGLLFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCDSTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKAHVVECASKSEK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0499 890 Gene3D - 46 98 - -
Lele17g0499 890 SUPERFAMILY WD40 repeat-like 544 861 IPR036322 GO:0005515
Lele17g0499 890 SMART WD40_4 585 625 IPR001680 GO:0005515
Lele17g0499 890 SMART WD40_4 660 700 IPR001680 GO:0005515
Lele17g0499 890 SMART WD40_4 705 745 IPR001680 GO:0005515
Lele17g0499 890 SMART WD40_4 531 570 IPR001680 GO:0005515
Lele17g0499 890 SMART WD40_4 811 858 IPR001680 GO:0005515
Lele17g0499 890 SMART WD40_4 754 794 IPR001680 GO:0005515
Lele17g0499 890 MobiDBLite consensus disorder prediction 633 653 - -
Lele17g0499 890 SUPERFAMILY NAP-like 29 287 IPR037231 -
Lele17g0499 890 MobiDBLite consensus disorder prediction 289 344 - -
Lele17g0499 890 FunFam Nucleosome assembly protein11 112 288 - -
Lele17g0499 890 MobiDBLite consensus disorder prediction 633 668 - -
Lele17g0499 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 761 794 IPR001680 GO:0005515
Lele17g0499 890 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 443 509 IPR022052 -
Lele17g0499 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 712 745 - -
Lele17g0499 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 761 794 - -
Lele17g0499 890 Pfam Nucleosome assembly protein (NAP) 53 288 IPR002164 GO:0005634|GO:0006334
Lele17g0499 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 709 IPR001680 GO:0005515
Lele17g0499 890 MobiDBLite consensus disorder prediction 370 444 - -
Lele17g0499 890 PANTHER WD40 REPEAT FAMILY 437 873 - -
Lele17g0499 890 Gene3D - 415 876 IPR015943 GO:0005515
Lele17g0499 890 Pfam WD domain, G-beta repeat 713 745 IPR001680 GO:0005515
Lele17g0499 890 Pfam WD domain, G-beta repeat 755 794 IPR001680 GO:0005515
Lele17g0499 890 Pfam WD domain, G-beta repeat 590 625 IPR001680 GO:0005515
Lele17g0499 890 Gene3D Nucleosome assembly protein 112 288 - -
Lele17g0499 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 745 IPR001680 GO:0005515
Lele17g0499 890 MobiDBLite consensus disorder prediction 371 440 - -
Lele17g0499 890 MobiDBLite consensus disorder prediction 293 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0499 Lele-ChrLele17 17204981 17215874 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0499 17 17204981 17215874 Lele19g1039 19 6686932 6690284 hybridization
Lele17g0499 17 17204981 17215874 Lele20g0400 20 11726660 11730556 hybridization