Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1894 ATGGAACTCACTGATCATAGAGTTGTTGTGAATGGGGAGAGTGAGGCAATGGACAATGAGCCTGCTGCAAGCATGCCTCTGAGGCCGCGCCAAATCTACTCGACATATCCTACAGGCTTAGTGAAGAAGACAGCTTATATATTTGACGGCTTAGGGAATTTTTACAATAAGGAATGGGATCTAGCTGACCTTCATCACAACAGAAAAAGAGAATCAAAGCTTGTAGATGGAAGAGGGAATGAGTTTTCTTGGGTTAATTCACCTGGTCCTCCCACCAGTGACTTTACATTTAGGATTGCTGCTAGAGTCACAGAAAATTCAGTAATTACTGTGTCTTTGGGGCGTGTTCCCCGATTAGGTTTTTCACGGACGGGAGAGTCTCTTCTTTCTGAGATTCCTAGCTTGGAAAGTTCCCCTCATTTAGGAGATCAGCAGAAACAGGGGAATGGGATTGTAATTAAAGAGCATGTTCTTGAATTCTTAATAACTATGAATCATTCCGAGGAAGCTGACAATCCAGTTCCCAGATCTGTCTCAAACCTTGTAGTTCATATAATCGACACGCACGTGGATCAGCTTCAAGATCTTGTAACTAAATTTGAGATGGAGTTGGACTCTGTGGAGCTTGCCTTGGATAAAGGTGGTTTTGCTTTGAAGAAACAAATGCTAGATGACAGAAGATTTCCCAAACTGCATCTGAACTTGCAGCGTCTTCTTCAGGTGATTTCTCATGGAGAACAAGTATTTTTACGGGTCAGAGAAAAGTGCTCTTTAAAACCTTGGTTTGCCAATGAAGACATTAGCTCTCTTGAAGAACTAATTGGAAGATTAAAGAGGTTGAAGGAGAATGTTGGATTTATAGTAAATCGTGTAACTGTGATTCAGGCTGGTCTTGACAGCTGGCAAGCTGAACAAATAAACAGGAAACTTTACTACCTTTCATTCCTTTCAATCATATTCCTCCCATTATCCATCATCACAGGAGTTTTTGGCATGAATGTTGGAGGAGTTCCATGGACAGGCCAAAACAATCCCGAGCTTAAGGATGGAAGTCATTTCTCAGAAGACCTCTACACATTGGAGATCAAGGGAGAGGAGGATACCTTCGGATTTGAAGATGAAAGGCTCTGTTCCTGTGTAAACATCATCCTGTTTTCAATGACTCTATTGGGACAAAACAGATTAGATGAGCCGATAATCAGCTGCCATGCATCATATAAAAAAAATAACAGTTGCCACGTTATAGAAGAACCAGAAGAAGCCTCAGAAATGGAGGATTCATCAAGCATAGATTCTTTGGTAGATGAAAATGGAGACTTGTGA 1323 0.4127 MELTDHRVVVNGESEAMDNEPAASMPLRPRQIYSTYPTGLVKKTAYIFDGLGNFYNKEWDLADLHHNRKRESKLVDGRGNEFSWVNSPGPPTSDFTFRIAARVTENSVITVSLGRVPRLGFSRTGESLLSEIPSLESSPHLGDQQKQGNGIVIKEHVLEFLITMNHSEEADNPVPRSVSNLVVHIIDTHVDQLQDLVTKFEMELDSVELALDKGGFALKKQMLDDRRFPKLHLNLQRLLQVISHGEQVFLRVREKCSLKPWFANEDISSLEELIGRLKRLKENVGFIVNRVTVIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQNNPELKDGSHFSEDLYTLEIKGEEDTFGFEDERLCSCVNIILFSMTLLGQNRLDEPIISCHASYKKNNSCHVIEEPEEASEMEDSSSIDSLVDENGDL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1894 440 Coils Coil 263 283 - -
Lele16g1894 440 Pfam CorA-like Mg2+ transporter protein 172 343 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lele16g1894 440 Coils Coil 190 210 - -
Lele16g1894 440 MobiDBLite consensus disorder prediction 419 440 - -
Lele16g1894 440 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 305 343 IPR045863 -
Lele16g1894 440 PANTHER OS08G0130000 PROTEIN 85 350 - -
Lele16g1894 440 MobiDBLite consensus disorder prediction 1 22 - -
Lele16g1894 440 MobiDBLite consensus disorder prediction 418 440 - -
Lele16g1894 440 Gene3D Magnesium transport protein CorA, transmembrane region 175 301 - -
Lele16g1894 440 Gene3D Magnesium transport protein CorA, transmembrane region 302 353 - -
Lele16g1894 440 SUPERFAMILY CorA soluble domain-like 171 295 IPR045861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1894 Lele-ChrLele16 11357171 11360448 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1894 16 11357171 11360448 Lele16g1894 16 11357171 11360448 ECH
Lele13g0615 13 18328888 18332429 Lele16g1894 16 11357171 11360448 hybridization
Lele14g0516 14 16858118 16861121 Lele16g1894 16 11357171 11360448 hybridization