Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1795 ATGGGATTGCATGCAAAAATTTGGCACAACGTTGCTGTGCCTGCATGCGACGTGTTCATAAACCACCGTAGGGTTGACACGAGACGTACGGTGGTTCGCTTGCTGTACGACCATCTGAGGCAGCAAGGATGCAAGCCGTTCTTGGACGTTGAAAATCTGAAACCTGGAGATAGGTTGTTGGACACCATTGATAAATCTATACGAGGTTGTAAGGTTGGGGTTACTGTCTTTTCGCCTCATTATTGTGATTCCTATTACTGTCTCCATGAGCTCTCACTTCTCGTGGAATCAAAGAAACGAATCGTTCCGATTTTCTATGATGTGAAGCCATCGCAGCTTCAGGTTAAGGAGAGTGTAATATTGAGTTGTTCCCAGAGAGATCTGATGAAGAATTTTAATTTGGCAATTGAAGAAGCTAAATCCACTGTGGGGCTGTCCTTCGACTCCTCCAAAGATGACTGGTCGGAGCTGTTACGTAAAGCTTCAAATGCGGTGATGAGCAACTTGTACGAAGAAATCAGTGCATGA 528 0.4489 MGLHAKIWHNVAVPACDVFINHRRVDTRRTVVRLLYDHLRQQGCKPFLDVENLKPGDRLLDTIDKSIRGCKVGVTVFSPHYCDSYYCLHELSLLVESKKRIVPIFYDVKPSQLQVKESVILSCSQRDLMKNFNLAIEEAKSTVGLSFDSSKDDWSELLRKASNAVMSNLYEEISA 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1795 175 Pfam TIR domain 18 115 IPR000157 GO:0007165
Lele16g1795 175 ProSiteProfiles TIR domain profile. 14 140 IPR000157 GO:0007165
Lele16g1795 175 Gene3D - 10 142 IPR035897 -
Lele16g1795 175 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 113 IPR035897 -
Lele16g1795 175 SMART till_3 15 164 IPR000157 GO:0007165
Lele16g1795 175 PANTHER TMV RESISTANCE PROTEIN N-LIKE 16 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1795 Lele-ChrLele16 10573209 10574839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1795 14 165 Miscellaneous Gene Families AT1G57670 25.767 1.01e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1795 16 10573209 10574839 Lele13g0707 13 19100694 19103141 CCT
Lele16g1795 16 10573209 10574839 Lele14g0604 14 17509750 17512931 CCT
Lele16g1795 16 10573209 10574839 Lele15g1775 15 10711793 10714293 CCT
Lele16g1795 16 10573209 10574839 Lele16g1807 16 10678528 10681385 CCT
Lele16g1795 16 10573209 10574839 Lele16g1795 16 10573209 10574839 ECH
Lele13g0717 13 19198118 19199611 Lele16g1795 16 10573209 10574839 hybridization
Lele14g0615 14 17608120 17608512 Lele16g1795 16 10573209 10574839 hybridization