Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1752 ATGCCCTCTTGCCGTGAGTCGGTGATTGCTGGTGTTAAACGGTCTCCATTGGTAGCAGATAGAGTAAAGTGTTTGGCTTCATCATGGGGCAAATCTCCTTTGGCAAAAGCTACTCCTCCTACTTTTATTAGATTTCTGGCAGTAACTACGTATATTGCAAAAACAAAAAAAAGATTGTCATTTCCTTCAAAATATTACCATAGCAAGACAGGCTTCTCATTGATGGAAATGCACATTATAGATTCCGACTGGGAGACTTTCAGTGAGAGCAGCAGCAGCGAGGATCAAGAGGAAATTGATTTTCTATATGCTGGGCAAGCTCGGAGCATACTATCCAGTTTAGAGGAAAGCATTGGGAAAATTGATGATTTCCTCTCATTTGAAAGAGCATTTGTTCATGGGGATGTGGTTTTCTCCTTGTCAGACCCATCTGGACAGATGGGCAGGGTTACAGGTGTTGATGTCTTTGTGGATTTGGAAAGTGTTCATGGAAAATTATTAAAAAATGTAAACTCCAAGAGGCTTCTGAAAATTCGCTCCATTTCAGAAGGTGATTATGTGATTAAGGGGCCATGGCTTGGAAGAGTTCAAAAGGTGGTGGACAAAGTAACTGTATTATTTGATGATGGAACTAATTGTGAGGTCACCGCGTTGGAAAGAGATAATATCTTGCCTCTGACTCGTAATTTGGTTGAAGACTTGCAGTATCCATACTATCCAGGGCAGAGAGTAAGGGTAAATTCCTCAACTTCTTCTAAGTCAGCTAGATGGTTATGTGGAACTTGGAGAGACAATCAAGATGAAGGAACCGTTTGTTCTGTTGAAGCAGGTCTAGTGTATGTTAACTGGCTCGTGTTTGTTCCCATGGGTCCCGATTTTACTGGAAATGCTCCCCCATGCTGGCAAGATTCCAAAAACTTGACCTTGCTCTCATGTTTTTCACATGCAAACTGGCAGCTTGGTGACTGGTGCATGCTTGCAGTGGCAGACCAAAAGGAACATAATTTTGGAAATTCATCTACCAGGGGTCCTACTAAGGAGCACATTATGGCAAGAGGATATAAAAATGGAAACGTTAACTTCAATATTGGGGAACTTTTTTTAATTGTGAAAATAAGGACCAAAGTTGATATTGTATGGCAGGATGGCGAACACTCTTTGGGATTAGATCCCCATACTCTACTCCCAGTGAATGTCATAGACACTCATGAATTTTGGCCTCAGCAGTTTGTGTTGGAAAAAGGTGCTTCTGACGATCATCCTAAGCCCAGCAGTCAAAGATGGGGAGTTGTCCAATTCGTGGATGCGAAAGAGCGTACTGTAAAGGTACAATGGAATACTGTTTCCATACCTATGCCAGAGAATTTGGCTGGAGATAAGATGGAGGAAACTGTGAGTGCCTATGAACTCATAGAGCACCCAGACTACTCCTATTGTTTTGGTGATATTGTTTTCAAGGCGGCTCAAAAACAGCTTGGTTACCAAGCTGAGAAAGATCAAGCAAAGTCAGCAACTGACTTGAATGTGGAGTCTGCTGTTATCGACAGGAACCACATCAGTTATCAGAATGAGTTCCCTAATAACTGTTACCAGTCATGTATTGGCAACGTTATTGGTTTCAAAGATGGAGCTGTAGAGGTGAAATGGGCTTCTGGTTTAACAACCAAGGTTGCGCCTCACGAAATTCTTCGAATTGATAAGCATGAAGGTTCAACTGAAACCCCTGTTCCATATGAAGCAGATATTGAGGAGTTGACTCAAGAGATGACTGAGAATGGAAATCTTACTTCTGACAAAAAGGGAAAGGGCTTGTTAGATTTTGATGTTGATAGAGTGAATTGTGAAAGGCCTCCAGGGGAATGTAGTACCTTTTCCCTTCCTCGAGCTGCCATTGAAATTTTCTCCAGCATTAAGGCCAGCATTTTTCAAACATTTGGTGTAACATCACTTTCGCGAGCAGTTTCTTTAGTCCCTACAACTGAAGAAGGAAATCAATCTGAAAATCTTAATAAGAAAGAAGTTTCAGAAACTTGTGAACTCTGCACTGAAGCGAATCCGAGGAGTGAATTGCAGTTTACCGAAGATATAACTCCGGATCAGGATGTTATTAGATTTTCTGAGAGGAAAGATCTTCCATTTTCTTCAAATAGCAACAATTCAGATCGGTTTAAGCAGTTTGATATAATAGATAATTGCTATGACCACCACTTCTTTGATGAGCAAAAAGGGTTGGCATTATCTCAGGTAAAAAGAGGGTGGGTGAAAAAGGTTCAGCAAGAATGGAGCATCCTAGAGAGAAATCTTCCAGAAACTATTTATGTCCGTGTGTTTGAAGAAAGAATGGATCTCCTGCGAGCAGCCATCGTGGGTGCACCTGGAACTCCTTATCATGATGGCTTATTCTTCTTCGATGTTTGTTTCCCTCCAGAGTATCCTAATGAACCTCCTATGGTGCACTACAATTCGGGTGGGCTCAGATTAAACCCTAATTTGTACGAATCGGGAAAAGTCTGTCTGAGCCTCCTGAACACGTGGACCGGTACGGGCAGTGAAATGTGGAACCCAGGGGCATCCACAATTCTTCAAGTCCTTCTCTCTCTGCAGGCCCTTGTCCTTAATGAAAAGCCTTATTTCAATGAGGCTGGATATGACCAGCAGATCGGCAGAGCCGAAGGAGAGAAGAATTCAGTGAGCTACAACGAAAATGCTTTCCTTGTCACCTGCAAATCAATGCTATATCTGCTGAGAAAGCCACCCAAGCATTTCGAGTCACTAGTGGAAGAGCACTTCAACCAATGCGCACAACACATGCTTCTCGCTTGCAAGAGGTATAGCGAAGGAGCTCCCATTGGATGTGCTTTTGAATGTGGAAAAACCATGCACCAAAAAGATAAGAAGGGAACTTCTACAGGTTTTAAAATCATGCTTGCTAAGCTCTTCCCCATGCTGGTCGAGGCGTTTTCCGGTAAAGGAATTGATTGCAGCCAGTTTGTTCAGTTGCAGAAGTAA 3009 0.4237 MPSCRESVIAGVKRSPLVADRVKCLASSWGKSPLAKATPPTFIRFLAVTTYIAKTKKRLSFPSKYYHSKTGFSLMEMHIIDSDWETFSESSSSEDQEEIDFLYAGQARSILSSLEESIGKIDDFLSFERAFVHGDVVFSLSDPSGQMGRVTGVDVFVDLESVHGKLLKNVNSKRLLKIRSISEGDYVIKGPWLGRVQKVVDKVTVLFDDGTNCEVTALERDNILPLTRNLVEDLQYPYYPGQRVRVNSSTSSKSARWLCGTWRDNQDEGTVCSVEAGLVYVNWLVFVPMGPDFTGNAPPCWQDSKNLTLLSCFSHANWQLGDWCMLAVADQKEHNFGNSSTRGPTKEHIMARGYKNGNVNFNIGELFLIVKIRTKVDIVWQDGEHSLGLDPHTLLPVNVIDTHEFWPQQFVLEKGASDDHPKPSSQRWGVVQFVDAKERTVKVQWNTVSIPMPENLAGDKMEETVSAYELIEHPDYSYCFGDIVFKAAQKQLGYQAEKDQAKSATDLNVESAVIDRNHISYQNEFPNNCYQSCIGNVIGFKDGAVEVKWASGLTTKVAPHEILRIDKHEGSTETPVPYEADIEELTQEMTENGNLTSDKKGKGLLDFDVDRVNCERPPGECSTFSLPRAAIEIFSSIKASIFQTFGVTSLSRAVSLVPTTEEGNQSENLNKKEVSETCELCTEANPRSELQFTEDITPDQDVIRFSERKDLPFSSNSNNSDRFKQFDIIDNCYDHHFFDEQKGLALSQVKRGWVKKVQQEWSILERNLPETIYVRVFEERMDLLRAAIVGAPGTPYHDGLFFFDVCFPPEYPNEPPMVHYNSGGLRLNPNLYESGKVCLSLLNTWTGTGSEMWNPGASTILQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLVTCKSMLYLLRKPPKHFESLVEEHFNQCAQHMLLACKRYSEGAPIGCAFECGKTMHQKDKKGTSTGFKIMLAKLFPMLVEAFSGKGIDCSQFVQLQK 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1752 1002 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 752 912 IPR000608 -
Lele16g1752 1002 Pfam Ubiquitin-conjugating enzyme 757 903 IPR000608 -
Lele16g1752 1002 SUPERFAMILY UBC-like 746 921 IPR016135 -
Lele16g1752 1002 CDD UBCc 754 907 IPR000608 -
Lele16g1752 1002 FunFam Probable ubiquitin-conjugating enzyme E2 23 714 991 - -
Lele16g1752 1002 Gene3D Ubiquitin Conjugating Enzyme 715 993 IPR016135 -
Lele16g1752 1002 SMART ubc_7 755 912 - -
Lele16g1752 1002 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 77 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1752 Lele-ChrLele16 10252268 10257278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1752 95 996 Miscellaneous Gene Families AT2G33770 50.715 0.0 899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1752 16 10252268 10257278 Lele16g1752 16 10252268 10257278 ECH
Lele13g0768 13 19548347 19553827 Lele16g1752 16 10252268 10257278 hybridization
Lele14g0658 14 17889823 17894677 Lele16g1752 16 10252268 10257278 hybridization