Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0457 ATGAGGACTTTCTTCGCTCCTGACTTCTGTAAAGAAGTACAACCAAATGTTCTGAATCCACAGTCCTGGCTCCAGGTTGAAAGAGGAAAACTTCCCAAACTGTCATCACAATCCTCTTCTGCATCAATTGAGTCTCTAATCAAGGTCCCAGATCCTTCTATACAACCATTCTTTAAACCTGTTGATTATGTGGAAGTTCTAGCTCGAATTCATGAAGAACTCGAGTCATGTCCCCCACAAGATCGGTCAAACCTATATTTATTGCAATACCAGGTCTTTAGGGGCCTTGGGGAAGTTAAATTGATGCGTAGAAGCCTCCGGGCAGCTTGGCAGAGAGCTAACACTGTTCATGAGAAGATAATATTTGGGGCTTGGTTAAAGTATGAGAAACAAGGGGAAGAGCTGATTGCTGATTTGCTGAAAACTTGTGGTAAATGTGCAAAGGAGTTTGTGCTAATAGATGTGGCATCTCATATTCCTTTTGATGTCGATGAAAGTTTGCAAGAGAGACTTTCGGTGAATGGGAACCACATTTCACAATATGTTATTTTTACCGTTGGAAATGATAAGATAATTTGTGACAGACATAAAATGTCTGAACTTTCAGCACCATTTCATGCAATGCTAAAGGGATCTTTCAGTGAGTCACTTTCTGAGACCATAGATTTGTCTGAGAACAATATCTCCCCTGCAGGCATGAGGGCAATAAGTTACTTCAGTCTGAGAGGCAGTTTATATGACGTTCCCCCAAATCTATTGTTGGAGATATTAGCTTTTGCTAACAAGTATTGTTGTGAAAGACTCAAAGATGCCTGTGATAGAAGACTAGCGTCTTTAATTTCCTCCAAAGAAGATGCTGTGGAACTCATGGATTATGCTCTTGAAGAGAATTCTCCTGTCCTTGCCGCATCTTGTTTGCAAGTCCTTTTATGCGATCTTCCAAACTGTTTGAATGACAATAGGGTGGTAGGGATATTTACTGGTGCTAATAGGCAGCAGCTGGCAGTAATGGTTGGGCCTGGTTTATTTTCACTTTACTGTTTATTAAGTGAAGTTTCTATGAACCTTGATCCTAGTTCAGACATACCAGTTCAGTTCCTGGAAAGATTGGTGGATTTTGCTGAAACAGACAAGCAGAGACTGCTGGCTTTTCATCAGTTGGGATGTGTAAGACTCTTAAGGAAAGAACACGATGAAGCCCGAAGCCTATTTGAGAGTGCTTTAAATGCAGGCCATATTTATTCTGTAGCAGGTTTAGCTAGATTGGATTTTATAAAGGGTGAGAAGCTTCTATCTTATGAGAAGCTCAGCTCAGTAATTTCCTCTGTAACCCCAGTTGGGTGGATGTACCAGGAAAGATCACTATATTGTGAAGGCAACAATAGGTGGGAGGACCTTGAGAAAGCTACCGATCTAGACCCTACGCTTATATATCCCTACATGTGTAGGGCTGCCAATTTAATGAGGACTCAAAATGTTCAAGCTGCCCTGGCAGAAATGAATAGGATACTTGGTTTCAAACTTTCATTGGAATGCTTAGAACTACGGTTTTTTCTCAATCTAGCCCTTGAGGACTACAAAGCAGCCCTCTGTGATGTTCAAGCAATTCTTACTCTGCGTCCTGATTATAGAATGTTTGAGGGGCGAGTAGCAGCATCCCAATTCCGTACTCTTGTACGTGAGCATGTTGAACAGTGGACTACGGCAGATTGTTGGGCAAGACTGTATGATTGTTGGTCTGCAGTTGATGATATTGGGTCTCTCTCTGTTATCTATCAGATGCTTGAATCTGATGCAGCAAAGGGTGTCCTATACTTCAGACAGTCATTGCTTCTTCTTAGGCTAAACTGTCCTGAGGCTGCTATGCGGAGTTTACAATTAGCTCGCCAACATGCATCAAGTAAGCACGAAGAACTTGTATATGAGGGGTGGATCTTGTATGATACGGGTCACTATGAGGAAGGTCTCCAGAAAGCTGAAGAATCTATTAGTAGCAAAAGGTCCTTTGAGGCTTTCTTCCTGAAGGCCTATGCATTGGCCGACTCTAGTCTAGATTCATCATGTTCTTCAACTGTTATTTCCCTTCTGGAAGATGCATTGAAGTGTCCATCGGATAATCTTCGCAAAGGTCAGGCCCTGAACAATCTTGGTAGTGTTTTCGTTGACTCTGGGAAATTAGACTCAGCAGCTGATTGTTACATAAATGCTCTTGAAATCCGGCATACCCGAGCACACCAGGGTCTTGCTCGTGTTTATTTTTTCAAGAATGACAAGGCTGCTGCTTACAATGAAATGACCAAACTTATTGAGAAGGCAAAAAACAAAGCATCTGCCTATGAGAAGAGATCCGAGTACTGTGATCGGGAACTTGCAAAGGCTGACCTGGAGATGGTGACTCGATTAGATCCACTGAGAGTATATCCCTACAGATATCGTGCTGCAGTGTTGATGGACAATCACAAGGAGGAGGAAGCCATTGCGGAACTGTCGAGAGCAATAGCATTTAAAGCTGATCTGCACCTCTTACATCTACGAGCGGCATTCCATGAACACAAAGGGGATGTGTTAGGCGCCCTCAGAGACTGTCGGGCTGCGCTCTCGGTGGACCCGAACCATCAAGAAATGTTGGAACTTCACAGTCGAGTTAACAGCCACGAGCCATGA 2664 0.4294 MRTFFAPDFCKEVQPNVLNPQSWLQVERGKLPKLSSQSSSASIESLIKVPDPSIQPFFKPVDYVEVLARIHEELESCPPQDRSNLYLLQYQVFRGLGEVKLMRRSLRAAWQRANTVHEKIIFGAWLKYEKQGEELIADLLKTCGKCAKEFVLIDVASHIPFDVDESLQERLSVNGNHISQYVIFTVGNDKIICDRHKMSELSAPFHAMLKGSFSESLSETIDLSENNISPAGMRAISYFSLRGSLYDVPPNLLLEILAFANKYCCERLKDACDRRLASLISSKEDAVELMDYALEENSPVLAASCLQVLLCDLPNCLNDNRVVGIFTGANRQQLAVMVGPGLFSLYCLLSEVSMNLDPSSDIPVQFLERLVDFAETDKQRLLAFHQLGCVRLLRKEHDEARSLFESALNAGHIYSVAGLARLDFIKGEKLLSYEKLSSVISSVTPVGWMYQERSLYCEGNNRWEDLEKATDLDPTLIYPYMCRAANLMRTQNVQAALAEMNRILGFKLSLECLELRFFLNLALEDYKAALCDVQAILTLRPDYRMFEGRVAASQFRTLVREHVEQWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSKHEELVYEGWILYDTGHYEEGLQKAEESISSKRSFEAFFLKAYALADSSLDSSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVFVDSGKLDSAADCYINALEIRHTRAHQGLARVYFFKNDKAAAYNEMTKLIEKAKNKASAYEKRSEYCDRELAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0457 887 Gene3D Potassium Channel Kv1.1; Chain A 170 309 IPR011333 -
Lele16g0457 887 Pfam Tetratricopeptide repeat 711 739 IPR019734 GO:0005515
Lele16g0457 887 Coils Coil 755 782 - -
Lele16g0457 887 Gene3D Tetratricopeptide repeat domain 770 885 IPR011990 GO:0005515
Lele16g0457 887 SUPERFAMILY POZ domain 182 276 IPR011333 -
Lele16g0457 887 Gene3D Tetratricopeptide repeat domain 361 584 IPR011990 GO:0005515
Lele16g0457 887 PANTHER ETO1-RELATED 1 886 IPR044631 GO:0010105
Lele16g0457 887 ProSiteProfiles TPR repeat profile. 710 743 IPR019734 GO:0005515
Lele16g0457 887 SUPERFAMILY TPR-like 474 739 IPR011990 GO:0005515
Lele16g0457 887 SMART tpr_5 710 743 IPR019734 GO:0005515
Lele16g0457 887 SMART tpr_5 636 669 IPR019734 GO:0005515
Lele16g0457 887 SMART tpr_5 839 872 IPR019734 GO:0005515
Lele16g0457 887 SMART tpr_5 381 414 IPR019734 GO:0005515
Lele16g0457 887 SMART tpr_5 602 635 IPR019734 GO:0005515
Lele16g0457 887 SUPERFAMILY TPR-like 693 878 IPR011990 GO:0005515
Lele16g0457 887 Gene3D Tetratricopeptide repeat domain 599 769 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0457 Lele-ChrLele16 2446320 2449800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0457 711 874 Glycosyltransferase AT3G04240 27.586 1.48e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1309 06 8389379 8391097 Lele16g0457 16 2446320 2449800 CCT
Lele07g1517 07 9324250 9327639 Lele16g0457 16 2446320 2449800 CCT
Lele08g1304 08 8335950 8337417 Lele16g0457 16 2446320 2449800 CCT
Lele13g1977 13 27220405 27223941 Lele16g0457 16 2446320 2449800 hybridization
Lele14g1903 14 25550731 25554211 Lele16g0457 16 2446320 2449800 hybridization