Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1977 ATGAGGGCTTTCTTCGCTCCTGACTTCTGTAAAGAAGTGCAACCAAATGTTTTGAATCCACAGTCCTGGCTCCAAGTTGAAAGAGGGAAACTTCCTAAACTGTCATCACAATCCTCTTCTGCATCAATCGAGTCTCTAATCAAGGTCCCAGAGCCATCTATACAACCATTCTTTAAACCTGTCGATTATGTGGAAGTTCTAGCTCAAATTCACGAAGAACTGGAGTCATGTTCCCCACAAGAGAGGTCAAACCTATATTTATTGCAATACCAGGTCTTTAGGGGCCTTGGGGAAGTTAAATTGATGCGTAGAAGCCTCCGGGCAGCTTGGCAGAGAGCTAACACTGTTCATGAGAAGATAGTATTTGGGGCTTGGTTAAAGTATGAGAAACAAGGGGAAGAGCTGATTGCTGATTTGCTGACAACTTGTGGTAAATGTGCAAAGGAGTTTGGGCTCATAGATGTGGCATCTCATATTCCTTTTAATGTTGATGAAAGTTTGCAAGAGAGATTTTGGATGAATGGGAACGACATTTCACAATATGTTATTTTTACCATTGGAAATGATAACATAATTTGTGACAGACATAAAATGTCTGAACTTTCAGCACCATTTCATGCAATGCTAAAGGGATCTTTCAGTGAGTCACTTTCTGAGACCATAGATTTGTCTGAGAACAACGTCTCCCCTGCAGGCATGAGGGCAATAAGTTACTTCAGTCTGAGAGGCAGTTTATATGACGTACCTCCCAATCTATTGTTGGAGATATTAGCCTTTGCTAACAGATATTGTTGTGAAAGACTCAAAGATGCTTGTGATAGAAGACTAGCGTCTTTAATTTCCTCCAAAGAAGATGCTGTGGAACTCATGGATTATGCTCTTGATGAGAATTCTCCTGTCCTTGCCGCATCTTGTTTGCAAGTCCTTTTATGCGATCTTCCAAACTGTTTGAATGACAATAGTGTGGCAGGGATATTTACTGGTGCTAATAGGCAGCAGCTGGCAGTCATGGTTGGGCCTGGTTTATTTTCACTTTACTGTTTATTAAGTGAAGTTTCTATGAACCTTGATCCTAGTTCAGATATAACAGTTCAGTTCCTGGAACGATTGGTGGATTTTGCTAAAACAGACAAGCAGAGACTGCTGGCTTTTCATCAGTTGGGATGTGTAAGACTCCTAAGGAAAGAATATGATGAAGCCCGTTGCCTATTTGAGGGTGCCTTAAATGCAGGCCATATTTATTCTGTAGCAGGTTTAACTAGATTGGATTTTATGAAGGGCGAGAAGCTTCTATCTTATGAGAAGCTCAGCTCAGTAATTTCCTCTGTCCCCCCAGTGGGGTGGATGTACCAGGAAAGATCACTATATTGTGAAGGCGACAATAGGTGGGAGGACCTTGAGAAAGCAACCAATCTAGACCCTACGCTTATATATCCCTACATGTGTAGGGCTGCCAACTTAATGAGGACTCAAAATGTTCAAGCTGCCCTGGCAGAAATCAATAGGATACTTGGTTTTAAACTTTCATTGGAATGCTTAGAACTACGGTTTTTTCTCAATCTAGCCCTTGAGGACTACAAAGCTGCCCTCTGTGATGTTCAAGCAATTCTTACTCTGCGTCCTGATTATAGAATGTTTGAGGGCCGAGTAGCGGCATCCCAATTCCGTACTCTTGTACATGAGCATGTTGAACAGTGGACTACAGCAGATTGCTGGGTGCGATTGTATGATTGTTGGTCTGCAGTTGATGATATTGGGTCTCTCTCTGTTATCTATCAGATGCTTGAAGCTGATGCAGCAAAGGGTGTCCTATACTTCAGACAGTCATTGCTTCTTCTTAGGCTAAACTGTCCTGAGGCTGCTATGCGGAGTTTACAATTAGCTCGCCAACATGCATTGAGTAAGCACGAGCAACTTATATATGAGGGGTGGATCTTATATGATACAGGTCACTATGAGGAAGGGCTCCAGAAAGCTGAAGAATCTATTAGTATCAAAAGGTCCTTTGAGGCTTTCTTCCTGAAGGCCTATGCATTGGCTGACTCTAGTCTAGATTCATCATGCTCTTCAACTGTAATTTCACTTCTGGAAGATGCATTGAAGTGTCCATCAGATAATCTTCGCAAAGGTCAGGCCCTGAACAATCTTGGTAGTGTTTTTGTCGACTCTGGGAAATTAGACCTAGCAGCTGATTGTTACATCAATGCCCTTGAAATCCGGCATACCCGAGCACACCAGGGTCTTGCTCGTGTTTATTTTTTCAAAAATGGCAAGGCTGCTGCTTACAATGAGATGACCAAACTTATTGAGAAGGCAAAAAACAATGCATCTGCCTATGAGAAGAGATCCGAGTACTGTGATCGGGAACTTGCAAAGGCTGACCTGGAGATGGTGACTCGGCTAGATCCACTGAGAGTATATCCTTACAGATATCGTGCCGCAGTGTTGATGGACAATCACAAAGAGGAGGAAGCCATTGCGGAACTGTCGAGAGCAATAGCATTTAAAGCTGATCTGCACCTCCTGCATCTAAGAGCGGCATTCCATGAACACAAAGGGGATGTATTAGGTGCCCTCAGGGACTGTCGGGCAGCGCTCTCGGTGGACCCCAACCATCAAGAAATGTTGGAACTTCACAGTCGAGTGAACAGCCACGAGCCATGA 2664 0.4328 MRAFFAPDFCKEVQPNVLNPQSWLQVERGKLPKLSSQSSSASIESLIKVPEPSIQPFFKPVDYVEVLAQIHEELESCSPQERSNLYLLQYQVFRGLGEVKLMRRSLRAAWQRANTVHEKIVFGAWLKYEKQGEELIADLLTTCGKCAKEFGLIDVASHIPFNVDESLQERFWMNGNDISQYVIFTIGNDNIICDRHKMSELSAPFHAMLKGSFSESLSETIDLSENNVSPAGMRAISYFSLRGSLYDVPPNLLLEILAFANRYCCERLKDACDRRLASLISSKEDAVELMDYALDENSPVLAASCLQVLLCDLPNCLNDNSVAGIFTGANRQQLAVMVGPGLFSLYCLLSEVSMNLDPSSDITVQFLERLVDFAKTDKQRLLAFHQLGCVRLLRKEYDEARCLFEGALNAGHIYSVAGLTRLDFMKGEKLLSYEKLSSVISSVPPVGWMYQERSLYCEGDNRWEDLEKATNLDPTLIYPYMCRAANLMRTQNVQAALAEINRILGFKLSLECLELRFFLNLALEDYKAALCDVQAILTLRPDYRMFEGRVAASQFRTLVHEHVEQWTTADCWVRLYDCWSAVDDIGSLSVIYQMLEADAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHALSKHEQLIYEGWILYDTGHYEEGLQKAEESISIKRSFEAFFLKAYALADSSLDSSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVFVDSGKLDLAADCYINALEIRHTRAHQGLARVYFFKNGKAAAYNEMTKLIEKAKNNASAYEKRSEYCDRELAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1977 887 SUPERFAMILY TPR-like 474 739 IPR011990 GO:0005515
Lele13g1977 887 Gene3D Tetratricopeptide repeat domain 599 773 IPR011990 GO:0005515
Lele13g1977 887 Gene3D Tetratricopeptide repeat domain 786 886 IPR011990 GO:0005515
Lele13g1977 887 SUPERFAMILY TPR-like 373 504 IPR011990 GO:0005515
Lele13g1977 887 Coils Coil 762 782 - -
Lele13g1977 887 Gene3D Tetratricopeptide repeat domain 363 547 IPR011990 GO:0005515
Lele13g1977 887 PANTHER ETO1-RELATED 1 886 IPR044631 GO:0010105
Lele13g1977 887 SUPERFAMILY POZ domain 182 276 IPR011333 -
Lele13g1977 887 SMART tpr_5 710 743 IPR019734 GO:0005515
Lele13g1977 887 SMART tpr_5 636 669 IPR019734 GO:0005515
Lele13g1977 887 SMART tpr_5 839 872 IPR019734 GO:0005515
Lele13g1977 887 ProSiteProfiles TPR repeat profile. 710 743 IPR019734 GO:0005515
Lele13g1977 887 Gene3D Potassium Channel Kv1.1; Chain A 167 309 IPR011333 -
Lele13g1977 887 SUPERFAMILY TPR-like 693 878 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1977 Lele-ChrLele13 27220405 27223941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1977 711 874 Glycosyltransferase AT3G04240 27.586 2.38e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1309 06 8389379 8391097 Lele13g1977 13 27220405 27223941 CCT
Lele07g1517 07 9324250 9327639 Lele13g1977 13 27220405 27223941 CCT
Lele08g1304 08 8335950 8337417 Lele13g1977 13 27220405 27223941 CCT
Lele13g1977 13 27220405 27223941 Lele15g0428 15 2470690 2474128 hybridization
Lele13g1977 13 27220405 27223941 Lele16g0457 16 2446320 2449800 hybridization