Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2011 ATGGGCGCTTCGCAATCAGTCTCACAAAAAAGCATCCATGAATTCACTGTCAAGGTATTCTCGTCTCAAGATGCCAGGGGTGGTGATGTGGACCTCGGCATCTACAAAGGGAAAGTGCTTCTTGTTGTTAACGTCGCTTCTAAATGTGGATTTACGGATTCCAATTACACTCAGTTAACTGAGCTTTACGGGAGATACAAGGATAAGGGCCTTGAAATATTGGCATTTCCTTGCAACCAATTCCTGAAGCAAGAGCCGGGGACAAGCCAAGAGGCTCAAGAGTTTGCATGCACAAGATACAAGGCTGAATATCCTATTTTTGGAAAGGTACGTGTGAATGGACCAGATGCCTCTCCGGTTTATAAATTCCTTAAATCAAAGAAAAGTGGGTTTCTGGGTTCCAGGATAAAGTGGAATTTCACCAAGTTTTTGGTTGACGAGGAGGGCCATGTGATCCAGCGTTATGGCCCTACCACTCCACCATTTGCATTTGAGTTATTCTTCCACTTTTTGATTCCCTGGCACTTCTTTCATTCTCCAATGACATCAAGAAGGCGTTGGGGGAGGCTTGAGAGAGTCCAGGACTAG 588 0.4507 MGASQSVSQKSIHEFTVKVFSSQDARGGDVDLGIYKGKVLLVVNVASKCGFTDSNYTQLTELYGRYKDKGLEILAFPCNQFLKQEPGTSQEAQEFACTRYKAEYPIFGKVRVNGPDASPVYKFLKSKKSGFLGSRIKWNFTKFLVDEEGHVIQRYGPTTPPFAFELFFHFLIPWHFFHSPMTSRRRWGRLERVQD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2011 195 CDD GSH_Peroxidase 11 161 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 ProSiteProfiles Glutathione peroxidase profile. 2 182 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 PANTHER GLUTATHIONE PEROXIDASE 6 165 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 ProSitePatterns Glutathione peroxidases active site. 37 52 IPR029759 -
Lele13g2011 195 SUPERFAMILY Thioredoxin-like 20 165 IPR036249 -
Lele13g2011 195 PIRSF Glutathion_perox 1 172 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 ProSitePatterns Glutathione peroxidases signature 2. 74 81 IPR029760 -
Lele13g2011 195 PRINTS Glutathione peroxidase family signature 136 145 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 PRINTS Glutathione peroxidase family signature 71 87 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 PRINTS Glutathione peroxidase family signature 35 52 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 FunFam Glutathione peroxidase 3 172 - -
Lele13g2011 195 Pfam Glutathione peroxidase 20 125 IPR000889 GO:0004602|GO:0006979
Lele13g2011 195 Gene3D Glutaredoxin 3 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2011 Lele-ChrLele13 27408821 27411992 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1361 06 8738310 8747642 Lele13g2011 13 27408821 27411992 CCT
Lele07g1568 07 9667470 9681231 Lele13g2011 13 27408821 27411992 CCT
Lele08g1357 08 8680397 8690003 Lele13g2011 13 27408821 27411992 CCT
Lele13g2011 13 27408821 27411992 Lele15g0394 15 2275143 2278741 hybridization
Lele13g2011 13 27408821 27411992 Lele16g0418 16 2262667 2263512 hybridization