Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1497 ATGTCTAGCTCTATGAAGGTTTTGGATCCTGCATTCCAGGCAGTGGGTCAGAAAGTAGGGACTGAAATATGGAGGATTGAGAATTTCCAGCCAGTACCGTTGCCTAAATCTGATCATGGAAAGTTCTACATGGGAGATTCGTACATTATTTTGCAGACAACACAAGGCAAAGGAGGCGCTTATTTCTATGATATACACTTCTGGCTTGGAAAGGATACCAGTCAGGATGAGGCTGGGGCAGCTGCCATCAAAGCTGTTGAACTTGATGCAGCTCTTGGAGGGCGTGCAGTGCAGCATAGGGAAGTCCAAGGCCATGAATCTGACAAATTTTTGTCATACTTTAAACCATGTATAATACCACTAGAGGGAGGTGTTGCATCTGGGTTTAAAAAACCTGAGGAAGAAGTGTTTGAAACACGCTTGTACATATGCAAAGGAAAACGAGTTGTCAGAATGAAACAGGTCCCTTTTGCTCGGTCTTCTCTGAATCATGATGATGTATTTATCCTTGACACTCAGAACAAGATTTATCAATTCAATGGGGCGAATTCAAATATTCAGGAAAGAGCCAAGGCTTTGGAAATAACCCAGTTTTTAAAGGAAAAATATCATGAGGGGAAATGTGAAGTTGCAATTGTTGATGATGGAAAGTTGGACACTGAGTCAGATTCAGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTCATTGGCGAGGATGATATTATTCCAGAGACTACTCCTGCTCAGCTTTATTGTATTGCTGATAGTGAGGTCAAACCAGTTGAAGCTGAACTGTCTAAATCACTGTTGGAGAATAACAAATGCTATTTACTGGACTGTGGTGCGGAGGTGTTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCATGCCAAGCTGCTGAGGAGTTCGTTGCAAGTCAAAATAGGCCGAAAGCAACCCAGATAACCAGAATTATTCAAGGTTATGAGCCACATGCTTTCAAGTCCAACTTTGATTCTTGGCCATCAGGATCCGCTGCTACTGGTGCTGAGGAAGGGAGAGGAAAAGTTGCAGCTTTGCTGAAGCAACAAGGCATGGGTGTCAAGGGGATGACAAAAAGTACACCAGTCAATGAAGAAATTCCACCTCTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGCTAATCAATGGAAGTGCCAAGAATCCATTGCCCAAGGAGGATATTGGGAAATTTTACAGTGGAGATTGTTACATCGTATTGTACACTTACCACTCTGGTGAGAGGAAGGAAGACTACTTCTTGTGTTGTTGGTTTGGTAAAGATAGCATTGAGGAAGACCAAAGGATGGCTACTCGATTGGCCAATACAATGTCCAACTCACTAAAGGGTAGACCTGTTCAGGGCTGCATATTTGAAGGTAAAGAGCCACCACAATTCGTTGCTCTCTTTCAGCCTATGGTGGTCCTTAAGGGAGGCTTGAGTTCTGGTTACAAGAAGTTAATAGCAGAGAAAGGTTTGCCAGATGAGACTTACACAGCAGAAAGTATTGCACTTATTCGAATTTCTGGAACTTCAATTCATAATAATAAAGCAGTGCAAATCGATGCAGTAGGAACATCATTAAATTCTACTGAGTGTTTCCTGCTGCAATCTGGCTCATCACTTTTCACTTGGCATGGAAGTCAATGTTCTTTTGAACAGCAGCAGCTGGCAGCTAAAATTGCTGAGTTTTTGAAGCCAGGAGTTGCAATAAAACATGCTAAGGAAGGGACAGAAAGTTCAGCCTTTTGGTTTGCACTTGGAGGAAAACAGAGCTTCACCAGCAAAAAAGCCACCAATGAAACTGTTAGAGATCCACATTTGTTCACATTTTCATTAAGCAAAGGAAAGTTTCAGGCAGAAGAAGTTTACAACTTTTCCCAAGATGATCTGTTGACAGAGGATATCCTCATACTTGACACACATGCTGAAGTATTTGTTTGGGTTGGTCAGTCTGTGGATTCAAAAGAAAAACAAAATGCTTTTGAAATTGGACAGAAATATATAGATAGGGCCGCAGCTCTAGAGGGACTCTCACCTCATGTACCACTGTATAAAGTTACAGAAGGCAACGAACCTTGCTTTTTCACAACATACTTTTCATGGGATCATGCAAAAGCTACTGCTCAAGGAAACTCGTTCCAGAAAAAGGTGTCATTACTTTTTGGGATTGGCCATGCTGTTGAGGATAAGTCCAATGGATCCAGTCAAGGAGGAGGACCTAGACAAAGAGCAGAAGCTTTAGCTGCCTTATCTTCTGCATTTAATTCGCCTTCTGAGAGAACATCCAGCATGGATAGAGATAGACTGAACGGAGTAAATCAAGGGGGTCCAAGACAAAGAGCTGAAGCTTTAGCTGCCTTGAACTCTGCATTTAATTCATCATCCCCAGGTAGAAATACAGTTCCCAGGCCTGCTGGAACAAGTCAAGGTTCACAAAGAGCAGCAGCGGTAGCTGCTCTTTCAAACGTTCTTACTGCTGAGAAGAAGCACTACTCACCTGATTCCTCTCCTGCTGGGCCAATCAGCAGTCCTGTTGCTGAAAGCAGTGCCTCTGAAGTTAAAAGTGAAAGTGGCCAGTCTGAAACAGAAGGTCATGAAGAAGTTGCAGATGCCAAGGAGACTGAAGAACTTGCAACTGAAGCAGGTAGCAATGGTGATGTAGAACCAAAACAGGAAAATGTTGAGGATGGGAATGATAATCAAAGTAGTCAGAGCACGTTCAGTTATGATCAACTAAAGACCAAATCTAGTAGTCCTGTGTCTGGGATAGATTTCAAACGAAGAGAGGCCTATCTATCAGATGAAGACTTCAACACGGTATTTGGAATGACAAAAGAAGCATTCTATAAATTGCCAAAATGGAAGCAAGACATGCAGAAAAGGAAAGCTGATCTGTTTTAG 2955 0.4267 MSSSMKVLDPAFQAVGQKVGTEIWRIENFQPVPLPKSDHGKFYMGDSYIILQTTQGKGGAYFYDIHFWLGKDTSQDEAGAAAIKAVELDAALGGRAVQHREVQGHESDKFLSYFKPCIIPLEGGVASGFKKPEEEVFETRLYICKGKRVVRMKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEITQFLKEKYHEGKCEVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVIGEDDIIPETTPAQLYCIADSEVKPVEAELSKSLLENNKCYLLDCGAEVFVWVGRVTQVEERKAACQAAEEFVASQNRPKATQITRIIQGYEPHAFKSNFDSWPSGSAATGAEEGRGKVAALLKQQGMGVKGMTKSTPVNEEIPPLLEGGGKMEVWLINGSAKNPLPKEDIGKFYSGDCYIVLYTYHSGERKEDYFLCCWFGKDSIEEDQRMATRLANTMSNSLKGRPVQGCIFEGKEPPQFVALFQPMVVLKGGLSSGYKKLIAEKGLPDETYTAESIALIRISGTSIHNNKAVQIDAVGTSLNSTECFLLQSGSSLFTWHGSQCSFEQQQLAAKIAEFLKPGVAIKHAKEGTESSAFWFALGGKQSFTSKKATNETVRDPHLFTFSLSKGKFQAEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQNAFEIGQKYIDRAAALEGLSPHVPLYKVTEGNEPCFFTTYFSWDHAKATAQGNSFQKKVSLLFGIGHAVEDKSNGSSQGGGPRQRAEALAALSSAFNSPSERTSSMDRDRLNGVNQGGPRQRAEALAALNSAFNSSSPGRNTVPRPAGTSQGSQRAAAVAALSNVLTAEKKHYSPDSSPAGPISSPVAESSASEVKSESGQSETEGHEEVADAKETEELATEAGSNGDVEPKQENVEDGNDNQSSQSTFSYDQLKTKSSSPVSGIDFKRREAYLSDEDFNTVFGMTKEAFYKLPKWKQDMQKRKADLF 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1497 984 FunFam Gelsolin 6 131 - -
Lele13g1497 984 Gene3D Severin 140 236 IPR029006 -
Lele13g1497 984 Gene3D Severin 7 139 IPR029006 -
Lele13g1497 984 FunFam Gelsolin 519 613 - -
Lele13g1497 984 Gene3D Severin 613 735 IPR029006 -
Lele13g1497 984 Gene3D Villin headpiece domain 908 984 IPR036886 GO:0003779|GO:0007010
Lele13g1497 984 MobiDBLite consensus disorder prediction 876 897 - -
Lele13g1497 984 SMART VILL_6 254 344 IPR007122 GO:0051015
Lele13g1497 984 SMART VILL_6 137 234 IPR007122 GO:0051015
Lele13g1497 984 SMART VILL_6 392 490 IPR007122 GO:0051015
Lele13g1497 984 SMART VILL_6 19 117 IPR007122 GO:0051015
Lele13g1497 984 SMART VILL_6 518 607 IPR007122 GO:0051015
Lele13g1497 984 SMART VILL_6 624 719 IPR007122 GO:0051015
Lele13g1497 984 FunFam Villin-like 1 614 735 - -
Lele13g1497 984 SUPERFAMILY Actin depolymerizing proteins 223 345 - -
Lele13g1497 984 MobiDBLite consensus disorder prediction 804 834 - -
Lele13g1497 984 Pfam Gelsolin repeat 540 600 IPR007123 -
Lele13g1497 984 Pfam Gelsolin repeat 29 111 IPR007123 -
Lele13g1497 984 Pfam Gelsolin repeat 149 217 IPR007123 -
Lele13g1497 984 Pfam Gelsolin repeat 264 337 IPR007123 -
Lele13g1497 984 Pfam Gelsolin repeat 637 713 IPR007123 -
Lele13g1497 984 Pfam Gelsolin repeat 405 483 IPR007123 -
Lele13g1497 984 FunFam Villin-4 248 354 - -
Lele13g1497 984 CDD gelsolin_S4_like 386 487 - -
Lele13g1497 984 MobiDBLite consensus disorder prediction 914 938 - -
Lele13g1497 984 SUPERFAMILY Actin depolymerizing proteins 596 718 - -
Lele13g1497 984 MobiDBLite consensus disorder prediction 854 875 - -
Lele13g1497 984 SUPERFAMILY Actin depolymerizing proteins 383 528 - -
Lele13g1497 984 SUPERFAMILY Actin depolymerizing proteins 510 613 - -
Lele13g1497 984 PANTHER VILLIN 4 974 IPR007122 GO:0051015
Lele13g1497 984 Gene3D Severin 524 612 IPR029006 -
Lele13g1497 984 ProSiteProfiles Headpiece (HP) domain profile. 919 984 IPR003128 GO:0003779|GO:0007010
Lele13g1497 984 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Lele13g1497 984 CDD gelsolin_S1_like 12 124 - -
Lele13g1497 984 CDD gelsolin_S5_like 519 609 - -
Lele13g1497 984 CDD gelsolin_S3_like 254 343 - -
Lele13g1497 984 FunFam Villin-like 1 132 247 - -
Lele13g1497 984 Gene3D Severin 250 354 IPR029006 -
Lele13g1497 984 SUPERFAMILY VHP, Villin headpiece domain 919 984 IPR036886 GO:0003779|GO:0007010
Lele13g1497 984 MobiDBLite consensus disorder prediction 846 938 - -
Lele13g1497 984 SUPERFAMILY Actin depolymerizing proteins 129 237 - -
Lele13g1497 984 CDD gelsolin_S6_like 622 720 - -
Lele13g1497 984 MobiDBLite consensus disorder prediction 771 834 - -
Lele13g1497 984 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 593 612 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 533 553 IPR007122 GO:0051015
Lele13g1497 984 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Lele13g1497 984 SMART VHP_1 949 984 IPR003128 GO:0003779|GO:0007010
Lele13g1497 984 CDD gelsolin_S2_like 138 232 - -
Lele13g1497 984 Gene3D Severin 388 523 IPR029006 -
Lele13g1497 984 Pfam Villin headpiece domain 949 984 IPR003128 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1497 Lele-ChrLele13 24301455 24310499 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0862 05 5285960 5286875 Lele13g1497 13 24301455 24310499 CCT
Lele13g1497 13 24301455 24310499 Lele15g0927 15 5415367 5424436 hybridization
Lele13g1497 13 24301455 24310499 Lele16g0950 16 5374733 5383766 hybridization