Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0744 ATGTTGCCACCACCATCCATGACTACTCGGTGGTCCAATAAGTGGCATTTTAACTTGCTTGTAATGGCCACACATACCCCAAAGAATATCCTCATCACCGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGACTCATCCGGAACTACCCTGGCTACAAAATTGTTGTTCTTGACAAACTTGATTACTGTTCTAATTCAAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGACATTGCCAGCGCTGACCTTGTCAACTACCTTCTTATCACTGAGTCCATTGACACAATAATGCACTTTGCTGCTCAGACTCATGTTGACAACTCGTTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCACGTTCTGTTAGAAGCCTGCAAGGTCACTGGTCAGATCAGAAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGATGAGGATGCTGTTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCCACAAATCCATACTCTGCCACGAAAGCTGGTGCAGAAATGCTGGTCATGGCATATGGTAGGTCGTATGGGTTGCCTGTGATCACAACTCGTGGAAATAATGTTTATGGGCCAAATCAGTTTCCTGAGAAGCTAATTCCAAAGTTCATCCTCTTAGCCATGCAAGGCAAGCCTCTTCCAATTCACGGGGATGGTTCAAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCCTTTGAGGTTATACTACACAAAGGAGAGGTTGGTCATGTCTATAATATTGGGACTACCAAAGAAAGGAGAGTAATTGATGTAGCCAAAGATATATGCAGACTTTTCTCAATGGACCCAGATTCTAGTATAAAATTTGTGGAGAATAGACCATTTAATGATCAGAGGTACTTTCTTGATGATCAAAAGTTGAAGGACTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGGCTGAAGAAAACGATAGAGTGGTATACCAAGAATCCAGATTGGTGGGGTGATGTCAGTGGGGCGTTGCTTCCTCATCCAAGGATGCTGATGATGCCGGGTGGGATGGAGAGACATTTTGAAGGCTCTGAAGAAGATAAATCTGCATCCTATGCCTCCACTAATACTCGAATGGTGGTTCCATCGTCTAAGAACACTAGCACTCAGCAGAAACATGCTTATAAGTTCTTGATTTATGGTAGAACAGGGTGGATCGGTGGTCTGTTGGGGAAACTCTGTGAAAAACAAGGGATTCCATTTGAATATGGAAAAGGGCGCTTAGAGGATCGCTCATCACTCATGGCAGATATCCACAATGTGAAGCCTACACACGTTTTCAATGCTGCTGGAGTGACTGGCAGACCCAATGTTGACTGGTGTGAATCTCATAAAACGGAAACCATTCGCACCAATGTTGCTGGTACTTTAACTCTGGCCGATGTCTGCAGAGAACAGGGGCTCTTGATGGTAAATTATGCCACTGGGTGTATATTTGAGTTTGATGCAGCACATCCAGAAGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCACAGGTTCTTTCTATTCCAAAACTAAAGCTATGGTCGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACTCTCAGGGTTCGCATGCCAATTTCATCTGATCTGAGTAACCCACGCAACTTCATCACAAAGATCACTCGTTACCACAAAGTGGTTAACATTCCAAACAGCATGACTATCTTGGATGAACTTCTGCCTATTTCAATTGAAATGGCAAAGCGAAACTTGCGTGGCATCTGGAACTTCACAAATCCTGGGGCTGTTAGCCACAATGAGATCCTTGAGATGTACAGGGATTACATTGATCCCAACTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCATCCAAGCTGAAGAAAGAGTTCCCAGAGTTGCTCTCCATCAAGGAATCACTGCTCAAATACGTTTTTGTACCAAACTGCAAAACCCATAAAAATTAA 2079 0.4348 MLPPPSMTTRWSNKWHFNLLVMATHTPKNILITGAAGFIASHVANRLIRNYPGYKIVVLDKLDYCSNSKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTKERRVIDVAKDICRLFSMDPDSSIKFVENRPFNDQRYFLDDQKLKDLGWSERTTWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGMERHFEGSEEDKSASYASTNTRMVVPSSKNTSTQQKHAYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKGRLEDRSSLMADIHNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMVNYATGCIFEFDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKITRYHKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWVNFTLEEQAKVIIAPRSNNEMDASKLKKEFPELLSIKESLLKYVFVPNCKTHKN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0744 692 CDD dTDP_HR_like_SDR_e 406 678 - -
Lele12g0744 692 Pfam RmlD substrate binding domain 406 578 IPR029903 -
Lele12g0744 692 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 24 359 - -
Lele12g0744 692 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 401 682 IPR036291 -
Lele12g0744 692 Gene3D - 30 334 - -
Lele12g0744 692 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 29 349 IPR005888 GO:0008460|GO:0009225
Lele12g0744 692 Pfam GDP-mannose 4,6 dehydratase 31 336 IPR016040 -
Lele12g0744 692 Gene3D - 221 343 - -
Lele12g0744 692 FunFam UDP-glucose 4,6-dehydratase 30 230 - -
Lele12g0744 692 CDD dTDP_GD_SDR_e 28 345 IPR005888 GO:0008460|GO:0009225
Lele12g0744 692 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 396 692 - -
Lele12g0744 692 Gene3D - 394 691 - -
Lele12g0744 692 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 353 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0744 Lele-ChrLele12 15574633 15578615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0744 29 340 Miscellaneous Gene Families AT4G00110 27.083 1.80e-21 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0744 12 15574633 15578615 Lele12g0744 12 15574633 15578615 ECH
Lele09g0579 09 4389006 4394359 Lele12g0744 12 15574633 15578615 hybridization
Lele10g0531 10 3841808 3848155 Lele12g0744 12 15574633 15578615 hybridization