Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0531 ATGCCTAAACGTGGGTGTAGAAATGCATGTGTTTGGATCAACCTTTGCCCCTTGGACTTAAGGGACAAAAGTTACTTAAAACAATGGCCAAAATTTCGTGCTTCTAGCCACTATTGGTGGCATTTTAAGTTGCTTGTAATGGCCACACATACCCCAAAGAATATCCTCATCACTGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGGCTCATCCGGAACTACCCTGGCTACAAAATTGTTGTTCTTGACAAACTTGATTACTGTTCTAATTCAAAGAACCTCATTCCTTCAAAATCTTCTCCCAACTTCAAGTTTGTGAAGGGGGACATTGCCAGCGCTGACCTTGTCAACTACCTTCTTATCACTGAGTCCATTGACACAATAATGCACTTCGCTGCTCAGACTCATGTTGACAACTCGTTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCACGTTCTGTTAGAAGCCTGCAAGGTCACTGGTCAGATCAGAAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGATGAGGACGCTATTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCCACAAATCCATACTCTGCCACGAAAGCTGGTGCAGAAATGCTTGTCATGGCATATGGTAGGTCGTATGGGTTGCCTGTGATCACAACTCGTGGAAATAATGTTTATGGGCCAAATCAGTTTCCTGAGAAGCTAATTCCAAAGTTCATCCTCTTAGCTATGCAAGGCAAGCCTCTTCCAATTCACGGGGATGGTTCAAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCCTTTGAGGTTATACTTCACAAAGGAGAGGTTGGTCATGTCTATAATATTGGGACTACCAAAGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCAGACTTTTCTCAATGGACCCAGATTCTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGGTACTTTCTTGATGATCAAAAGTTGAAGGACTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGGCTGAAGAAAACGATAGAGTGGTATACCAAGAATCCTGATTGGTGGGGTGATGTCAGTGGGGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCGGGTGGGATGGAGAGACATTTTGAAGGCTCTGAAGAAGATAAGTCTGCATCCTATGCCTCCACTAATACTCGAATGGTGGTACCATCGTCTAAGAACACTATCACTCAGCAGAAACATGCTTATAAGTTCTTGATCTATGGTAGAACAGGGTGGATCGGGGGTCTGTTAGGGAAACTCTCTGAAAAACAAGGGATTCCATTTGAATATGGAAAAGGGCGCTTAGAGGATCGCTCATCACTCATGGCAGATATCCACAATGTGAAGCCTACACATGTTTTCAATGCTGCTGGAGTGACTGGCAGACCCAATGTTGACTGGTGTGAATCTCATAAAACGGAAACCATTCGCACCAATGTTGCTGGCACTTTAACTCTGGCCGATGTCTGCAGAGAACAGGGGCTCTTGATGGTAAATTATGCCACTGGGTGTATATTTGAGTATGATGCAGCACATCCAGAAGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCACTGGTTCTTTCTATTCCAAAACTAAAGCGATGGTCGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACTCTCAGGGTTCGCATGCCAATTTCATCTGATCTGAGCAACCCACGCAACTTCATCACAAAGATCACTCGTTACAACAAAGTGGTTAACATTCCAAACAGCATGACTATCTTGGATGAACTTCTGCCTATTTCAATTGAAATGGCAAAGCGAAACTTGCGTGGCATCTGGAACTTCACAAATCCTGGGGCTGTTAGCCACAATGAGATCCTTGAGATGTACAGGGATTACATTGATCCCAACTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCATCCAAGCTGAAGAAAGAGTTCCCAGGGTTGCTCTCCATCAAGGAATCACTGCTCAAATACGTTTTTGAACCAAACTGCAAAACCCGTAAAAATTAA 2154 0.4345 MPKRGCRNACVWINLCPLDLRDKSYLKQWPKFRASSHYWWHFKLLVMATHTPKNILITGAAGFIASHVANRLIRNYPGYKIVVLDKLDYCSNSKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAIVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTKERRVIDVAKDICRLFSMDPDSSIKFVENRPFNDQRYFLDDQKLKDLGWSERTTWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGMERHFEGSEEDKSASYASTNTRMVVPSSKNTITQQKHAYKFLIYGRTGWIGGLLGKLSEKQGIPFEYGKGRLEDRSSLMADIHNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMVNYATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKITRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWVNFTLEEQAKVIIAPRSNNEMDASKLKKEFPGLLSIKESLLKYVFEPNCKTRKN 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0531 717 Gene3D - 246 368 - -
Lele10g0531 717 Pfam RmlD substrate binding domain 431 603 IPR029903 -
Lele10g0531 717 Pfam GDP-mannose 4,6 dehydratase 56 361 IPR016040 -
Lele10g0531 717 CDD dTDP_GD_SDR_e 53 370 IPR005888 GO:0008460|GO:0009225
Lele10g0531 717 CDD dTDP_HR_like_SDR_e 431 703 - -
Lele10g0531 717 Gene3D - 55 359 - -
Lele10g0531 717 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 427 706 IPR036291 -
Lele10g0531 717 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 54 374 IPR005888 GO:0008460|GO:0009225
Lele10g0531 717 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 378 IPR036291 -
Lele10g0531 717 Gene3D - 420 717 - -
Lele10g0531 717 FunFam UDP-glucose 4,6-dehydratase 55 255 - -
Lele10g0531 717 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 421 717 - -
Lele10g0531 717 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 49 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0531 Lele-ChrLele10 3841808 3848155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0531 54 365 Miscellaneous Gene Families AT4G00110 27.083 1.16e-21 96.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0531 10 3841808 3848155 Lele10g0531 10 3841808 3848155 ECH
Lele10g0531 10 3841808 3848155 Lele11g0590 11 5793908 5795192 hybridization
Lele10g0531 10 3841808 3848155 Lele12g0744 12 15574633 15578615 hybridization