Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0579 ATGCATCCTCATCTCCTTCCAACAGCAAGCACAACCCCATTCTATCTTCTTCCCATCGTAAGCACGACACCGTTCGTGTTGCCTCCGCTTTCTTCACCTCCATCTGTGCTCGTCGTCATCGGGAGATGTGGATATGAGAGGGATCTAGAAATTGTGAAGGTCAGGAGATGTGAATATGAGGGAGATCTAGAACCCGTGGAGATTGGGAGACAGGGGAAGTTGTCATCTGTTATGATTGTGAAGAAGTTGCTTGTAATGGCCTCTTATACCCCAAAGAACATCCTCATCACTGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGTCTCATCCGGCACTACCCTGGCTACAAAATTGTTGTTCTTGACAAACTTGATTACTGTTCTAATTCGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGACATTGCCAGCGCTGACCTTGTCAACTACCTTCTTATAACTGAGTCCATTGACACAATAATGCACTTTGCTGCTCAGACCCATGTTGACAACTCGTTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTTCTGTTAGAAGCCTGTAAGGTCACTGGTCAGATCAGAAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGATGAGGATGCTGTTGTTGGAAACCATGAAGCTTCTCAACTTCTTCCTACAAATCCATACTCTGCCACGAAAGCTGGTGCAGAAATGCTGGTCATGGCATATGATTCTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGGTACTTTCTTGATGATCAAAAGTTGAAGGACTTGGGTTGGTCTGAGAGGACCCCTTGGGAAGAGGGCCTGAAGAAAACCATAGAGTGGTATACCAATAATCCTGATTGGTGGGGTGATGTCAGTGGGGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCGGGTGGGATGGAGAGGCATTTTGAAGGCTCTGAAGAAGACAAGTCTGCATCCTATGCCTCCGCTAATACTCGAATGGTGGTTCCATCGACTAAGAACACTAGCACTCAGCAGAAACCTGCTTATAAGTTCTTGATCTATGGTAGAACAGGGTGGATAGGGGGTCTGTTAGGGAAACTCTGTGAAAAACAAGGGATTCCATTTGAATATGGAAAAGCGCGCTTAGAGGATCGCTCATCACTCATGGCAGATATCCACAATGTGAAGCCCACACATGTTTTCAATGCTGCTGGAGTGACTGGTAGACCCAATGTTGACTGGTGTGAATCTCATAAGACAGAAACCATTCGCACCAATGTTGCTGGTACTTTAACACTGGCCGATGTCTGCAGAGAACAGGGGCTCTTGATGGTAAATTATGCCACTGGGTGTATATTCGAGTATGATGCAGCACATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCACTGGTTCTTTCTATTCCAAAACTAAAGCTATGGTCGAAGAGCTTTTGAAAGAATATGAAAATGTGTGCACTCTCAGGGTTCGCATGCCAATTTCATGTGATCTGAGTAACCCACGCAACTTCATTACAAAGATCACTCGTTACAACAAAGTGGTCAACATTCCAAACAGCATGACTATCTTGGATGAGCTTCTGCTTATTTCAATTGAAATGGCAAAGCGAAACATGCGTGGCATCTGGAACTTCACAAATCCTGGGGCTGTCAGCCACAACGAGATCCTTGAGATGTACAGGGATTACATCGATCCCAACTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAGTTGCTCCACGAAGCAACAATGAGATGGATGCATCCAAGTTGAAGAAAGAGTTCCCAGAGTTGCTTTCCATCAAGGAATCACTGCTCAAATACGTCTTTGAACCAAACTGCAAGACCCATAAAGATTAA 1971 0.447 MHPHLLPTASTTPFYLLPIVSTTPFVLPPLSSPPSVLVVIGRCGYERDLEIVKVRRCEYEGDLEPVEIGRQGKLSSVMIVKKLLVMASYTPKNILITGAAGFIASHVANRLIRHYPGYKIVVLDKLDYCSNSKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYDSSIKFVENRPFNDQRYFLDDQKLKDLGWSERTPWEEGLKKTIEWYTNNPDWWGDVSGALLPHPRMLMMPGGMERHFEGSEEDKSASYASANTRMVVPSTKNTSTQQKPAYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKARLEDRSSLMADIHNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMVNYATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYENVCTLRVRMPISCDLSNPRNFITKITRYNKVVNIPNSMTILDELLLISIEMAKRNMRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLLKYVFEPNCKTHKD 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0579 656 Gene3D - 260 304 - -
Lele09g0579 656 Pfam RmlD substrate binding domain 370 542 IPR029903 -
Lele09g0579 656 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 317 IPR036291 -
Lele09g0579 656 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 368 646 IPR036291 -
Lele09g0579 656 Gene3D - 94 259 - -
Lele09g0579 656 Gene3D - 358 655 - -
Lele09g0579 656 Gene3D - 276 291 - -
Lele09g0579 656 Pfam GDP-mannose 4,6 dehydratase 95 262 IPR016040 -
Lele09g0579 656 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 260 323 - -
Lele09g0579 656 FunFam UDP-glucose 4,6-dehydratase 94 271 - -
Lele09g0579 656 CDD dTDP_HR_like_SDR_e 370 642 - -
Lele09g0579 656 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 360 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0579 Lele-ChrLele09 4389006 4394359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0579 93 259 Miscellaneous Gene Families AT4G00110 29.651 7.41e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0579 09 4389006 4394359 Lele09g0579 09 4389006 4394359 ECH
Lele09g0579 09 4389006 4394359 Lele11g0590 11 5793908 5795192 hybridization
Lele09g0579 09 4389006 4394359 Lele12g0744 12 15574633 15578615 hybridization