Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0574 ATGGCCCACACAAACCGGCCATGGGGACGTCGTCGTTTTGAGTTTTCTCCTCACAGATCTCCCCTGCGGATTATGAGATTATCCATTGTCATCATACAGCTTCAAGCCACAGTCGCAGTAGCCGGGCAAGCGGGGGGGAAAATGGCTGCCATGGCTGCTCTTCAGAGCTCCTTCACCTCTCTCTCCCTTTCCTCTAACAGTTTCATGGGGCAACGCCTCTCCCCCATCACTGTCTGCCCCGTTCCGGGCAAGCCAACAGAGAAGCCATGCCTCATCGTAATGAGGCTTAAACGATGGGAGCGAAAGGAATGTAAGCCAAACAGCCTTCCAATCTTGCACAAAATGCATGTTAAAGTTGGGGATACAGTGAAAGTAATATCTGGACGTGAAAAGGGTAAAATTGGAGAGATTACTAAGATCGTCAAGCATAACAGCACCGTCATCGTGAAAGATACGAATTTGAAGACAAAGCACATGAAGAGTAGAGAAGAAGGCGAACCAGGGCAAATCATTAAGATCGAAGGTGCCATCCACAGCTCAAATGTGATGTTATACTCTAAAGACCAGAATGTGGCAAGTCGTGTGGGGCATAAGATTCTTGAGAATGGCAAAAGAGTACGTTACCTCATAAAAACTGGAGAGATAATTGATACTGCCGAGAATTGGAAGAAACTGAAGGAGGCCAAAAAGAAAGATGAAGAAGCTGCTGTGGCTTCTTAA 720 0.4681 MAHTNRPWGRRRFEFSPHRSPLRIMRLSIVIIQLQATVAVAGQAGGKMAAMAALQSSFTSLSLSSNSFMGQRLSPITVCPVPGKPTEKPCLIVMRLKRWERKECKPNSLPILHKMHVKVGDTVKVISGREKGKIGEITKIVKHNSTVIVKDTNLKTKHMKSREEGEPGQIIKIEGAIHSSNVMLYSKDQNVASRVGHKILENGKRVRYLIKTGEIIDTAENWKKLKEAKKKDEEAAVAS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0574 239 SUPERFAMILY Translation proteins SH3-like domain 113 215 IPR008991 -
Lele12g0574 239 SMART kow_9 116 143 IPR005824 -
Lele12g0574 239 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 153 216 IPR003256 GO:0003735|GO:0005840|GO:0006412
Lele12g0574 239 Gene3D - 110 215 IPR014722 -
Lele12g0574 239 Hamap 50S ribosomal protein L24 [rplX]. 115 211 IPR003256 GO:0003735|GO:0005840|GO:0006412
Lele12g0574 239 Pfam KOW motif 119 150 IPR005824 -
Lele12g0574 239 ProSitePatterns Ribosomal protein L24 signature. 120 137 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lele12g0574 239 CDD KOW_RPL26 120 184 IPR041988 GO:0003723
Lele12g0574 239 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 49 235 IPR003256 GO:0003735|GO:0005840|GO:0006412
Lele12g0574 239 TIGRFAM rplX_bact: ribosomal protein uL24 114 216 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0574 Lele-ChrLele12 14183336 14185805 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0574 12 14183336 14185805 Lele12g0574 12 14183336 14185805 ECH
Lele09g0761 09 5986242 5988639 Lele12g0574 12 14183336 14185805 hybridization
Lele10g0691 10 5217218 5221064 Lele12g0574 12 14183336 14185805 hybridization