Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0562 ATGTCCCCAAAAGTCGATTTAAGATCAAGTTTGGTTTCTTTCTCTTCCCTTTTTGATATTGAGTATCTTAGCTTGGGTGAATCTTTTGTGGTACAATATGCTAAATGGAAGGAAGATTGCCGCAAGTTGTTTCCACTTGTTGGAACTGGAAAATTTATTACCGCACCTATAATCACAGAAGATGGCCATCCAATTCAAGATCCATTGGTGTTGTTAGAAACGAATCCAGACAAGGGAGTGATTGTCCCAGCTCAAAATGGCATAAATGATTCAAGTACAGGCAGTGCACATAACTTAGAAAAGGTTTTTTATGAGAAGCAAGAGAACTTGTCAAAACTATGGGATATTCTTACTGTTTATGCCTGGATAGATATGGATGTGGGTTATTGTCAAGGAATGAGTGACCTTTGCTTCCCTATGGTAATTCTTCTCAATGATGAAGCGGATGCACTTTGGTGCTTTGAGCATCTCATGCGCAGATTGAATGCTTGTATACAGTGTTGTGGCCTTTCAACTTTATCGCAACTTCTCACAATCCGCCTCCTTTTCTTGGATTTCCAAAAGCCTCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGGATGCTTATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTCACTCCTTGTATCTTTGGGAGATGATGTGGGCTCTGGAATACGATCCTGACTTGTTCTTGATATATGAAGAGCCTGACTCAGTTTCTACAAAAGCTGAGAGATCTACTAAAGGAAGAACGAAGTCATTACGTCAATGTGGGAAGTTTGAGAGAGAAAACATGAAAAATGCTGCAAAGACTGCGGATGCTTCTCTTCCCATATCTGTTTTCCTTGTTGCCAGTGTGTTGAAAGATAAGAGCTCAAAACTAATGCAGGAAGCACGTGGCCTGGATGATGTTGTCAAGATATTGAATGACGTTTCCGGAAAATTAGATGCCAGAAAAGCTTGCACTGGGGCAGTGAAACTTCACAGAAAATATTTGAAAAAGGTAGCGTGTCCTGCACATCTTATCTTCTGA 1038 0.4046 MSPKVDLRSSLVSFSSLFDIEYLSLGESFVVQYAKWKEDCRKLFPLVGTGKFITAPIITEDGHPIQDPLVLLETNPDKGVIVPAQNGINDSSTGSAHNLEKVFYEKQENLSKLWDILTVYAWIDMDVGYCQGMSDLCFPMVILLNDEADALWCFEHLMRRLNACIQCCGLSTLSQLLTIRLLFLDFQKPLGGGDYLFAFRMLMVLFRREFSFCHSLYLWEMMWALEYDPDLFLIYEEPDSVSTKAERSTKGRTKSLRQCGKFERENMKNAAKTADASLPISVFLVASVLKDKSSKLMQEARGLDDVVKILNDVSGKLDARKACTGAVKLHRKYLKKVACPAHLIF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0562 345 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 103 311 - -
Lele12g0562 345 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 190 333 IPR035969 -
Lele12g0562 345 ProSiteProfiles TBC/rab GAP domain profile. 1 226 IPR000195 -
Lele12g0562 345 SMART tbc_4 40 249 IPR000195 -
Lele12g0562 345 Pfam Rab-GTPase-TBC domain 103 224 IPR000195 -
Lele12g0562 345 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 93 161 - -
Lele12g0562 345 Gene3D - 162 339 - -
Lele12g0562 345 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 102 163 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0562 Lele-ChrLele12 14049689 14054604 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0562 12 14049689 14054604 Lele12g0562 12 14049689 14054604 ECH
Lele09g0780 09 6103527 6109596 Lele12g0562 12 14049689 14054604 hybridization
Lele10g0705 10 5330988 5335977 Lele12g0562 12 14049689 14054604 hybridization