Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0445 ATGGCGACCATTACTTCTTTGTCTTTCTCAGCATCAACTCAATTTTCTGAAAGAAAAGCGACTACGCCTTGGACTCGTTTACTGGGCTCAAATTTCAACTCCTTTCGGCTGCGCATGAATTGTGCATATCATTCTGTCGGTGTTCAAGCTTCGAATTCCAATCCGAAAATGGCTGTTCAATGCCTGCCTTCTGTGACAGACATTATCCCTGTTTCTGAGACAAAGTTAAATTTCCTCAAGGCATATAAGCGACCAATCCCTAGTATCTACAACACCGTGCTACAGGAGCTCCTTGTCCAGCAACATTTAATGAGATATAAGAGATCATACCGCTATGACCCTGTATTTGCTCTTGGTTTTGTCACTGTATATGGCCTCTTTCGTCTCCTTGAGTTGATAAATGCAACAGAACCAACAATCTCGGAAAAGGGTAGGCTACAGCTTTGTGTGGCTTTGAACATTAACAAAAAAAGTGTATATCATGATTTGGATGTGTACCATAATCTGCTTTCCAAGTTGGTACAAGCAAAAGAGCTGTTTAAGGAATATGTTGACAGGGAGAAGAAGAAAAGGGAAGAAAGGGCTGAATCACAAAAGGCTAACGAGGCAATCACAACATGA 621 0.4138 MATITSLSFSASTQFSERKATTPWTRLLGSNFNSFRLRMNCAYHSVGVQASNSNPKMAVQCLPSVTDIIPVSETKLNFLKAYKRPIPSIYNTVLQELLVQQHLMRYKRSYRYDPVFALGFVTVYGLFRLLELINATEPTISEKGRLQLCVALNINKKSVYHDLDVYHNLLSKLVQAKELFKEYVDREKKKREERAESQKANEAITT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0445 206 Pfam Thylakoid formation protein 125 194 IPR017499 GO:0010207|GO:0015979
Lele12g0445 206 Pfam Thylakoid formation protein 71 127 IPR017499 GO:0010207|GO:0015979
Lele12g0445 206 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 124 IPR017499 GO:0010207|GO:0015979
Lele12g0445 206 Coils Coil 190 206 - -
Lele12g0445 206 MobiDBLite consensus disorder prediction 187 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0445 Lele-ChrLele12 12342870 12346247 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0445 12 12342870 12346247 Lele29g0509 29 3075566 3077695 CCT
Lele12g0445 12 12342870 12346247 Lele12g0445 12 12342870 12346247 ECH
Lele09g0887 09 7200183 7202931 Lele12g0445 12 12342870 12346247 hybridization
Lele10g0815 10 6573199 6575883 Lele12g0445 12 12342870 12346247 hybridization