Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0887 ATGAAAGAGTATAGGCGACTTGCATGGGCGAGATTGGGTATATGCAAATTGGAAGATAAGGTGATCTTATATATTGCCCTTTGTAGAGTAGATGCACAGAAGTTGGAAGAGTGGGCTCAGACTCAAAATCCAACTTCCCTGGTTGAGTTTTCGTCAAAAGAAGGAGAAGTTGAGGGAATATTGAAGGATATTGCAGAAAGAGCAGGGGGAAAGGAGGCTTTTAGTTATAGTCGCTTCTTTGCTGTAGGCCTCTTTCGTCTCCTTGAGTTGGTAAATGCAACAAAACCAACAATTTTGGAAAAGGTTAGGCTACCTGTTTCATTTAGGCTTTGTGTGGCTTTGAACATTGACAAAAATAGTGTAGATCGGGATTTGGATATGTACCGCAATTTGCTTTCCAAGTTGGTACAAGCAAAAGCGCTGTTGAAGGAATATGTTGACAGCTTTAAGCAGCATGCAGTTGATCCGTTTAATCTGAAGATGGTGGTTAGTTTTGGAAGTATCTCAGAGTCAAAATATATCATTGATTTGCATCTTCTTGCTTCTGGGAGAGTCAGCTCTCAACTGAAAAGCCTCAAAGCATACTATTGGCTGGCTTAA 600 0.4067 MKEYRRLAWARLGICKLEDKVILYIALCRVDAQKLEEWAQTQNPTSLVEFSSKEGEVEGILKDIAERAGGKEAFSYSRFFAVGLFRLLELVNATKPTILEKVRLPVSFRLCVALNIDKNSVDRDLDMYRNLLSKLVQAKALLKEYVDSFKQHAVDPFNLKMVVSFGSISESKYIIDLHLLASGRVSSQLKSLKAYYWLA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0887 199 Pfam Thylakoid formation protein 28 150 IPR017499 GO:0010207|GO:0015979
Lele09g0887 199 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 28 152 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0887 Lele-ChrLele09 7200183 7202931 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0887 09 7200183 7202931 Lele29g0510 29 3079080 3080121 CCT
Lele09g0887 09 7200183 7202931 Lele09g0887 09 7200183 7202931 ECH
Lele09g0887 09 7200183 7202931 Lele11g0894 11 9054404 9056568 hybridization
Lele09g0887 09 7200183 7202931 Lele12g0445 12 12342870 12346247 hybridization