Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1082 ATGAAAGGAAGGGGTCATAATCGTGGGGTTTTCAAGTATAGATACGTATACAGTGAAGGGCGCACATTTCAAAGCTTTGGGCAGAGGACAGATTCAGACCATCGACCATTAGTGGCTAAGCCTAATGTCAAGAAATTATACCTTCTTTTGAGAGCATCTGATAACATATCTGCCACACGACGCTTGAATGATGAGATCATAGGAAAGGAGTTGTTCAAATTGTTGAAGGAGAATCATGGTGCAGAGTTCAATTCCTTTATCTCAAAGAAGGTGACTCTGGTTCCTGGGGACATCTCTCTTGATGACTTGAATATCAAGGACTCCGTTCTAAAGGAAGAGATTTGCAGTCAAACAGATTCTATAGTTAACTTAGCTGCAACAACTAAATTTGATGAAAGATACGATGTTGCATTGGGCTTAAATACATTTGGAGCCAAGAATGTTTTGAGCTTCGCCAAAGAATGTAATAAACTGAAGGTGCTGGCCCACGTCTCCACAGCATACGTATGTGGGGAGAAAGGAGGACTAATAGCAGAGGATCCCTATAAAATGGGTGAATCACTAAATGGAGTTTCTGGACTAAACATTGACGCCGAGAAGAAATTGGTACGAGAAACTCTGAAACGGCTTCAAGATGAGGGAACCACAGAATATGAAATTAAAGTCGCCATGAAAGAATTGGGTCTTAAAAGAACCATGGACAGTTTGATTGTTGCATATGGCAAAGGAAAACTAACTTGTTTTCCGGCGGAAATCGACGCAGTTTTCGACGCGATACCAGCGGACATGGTGGTGAATGCTATGTTGGTGGCGATGGTGGCTCATGCGAATGAGTCAAATGAAATAATATATCACGTAGGTTCCTCCATGAGAAATCCAGTGAGATACTCCAATCTCATAGACTATGCCTTAAGATACTTCACATCAAAGCCACTCAGGAACAAAGACGGCGAGATTGTGAAAGTTGGCAATGTTACTGTATTAAACAGCATGGACAGCTTCCGCACGTACATGTTCATTCGCTATATGCTTCTCTTGAAGGGGCTAGAGCTGGCGAATAAAGCGTTTTGTCAGTATTTTCGAGGGAAGTATCTTAACCTAAGCAGGCAGATTCAGATAGTGATGCGGTTGGTTGATCTCTACAGGCCTTACTTGTTCTTCAATGGCGTATTCGATAATATGAACACGGAGAAGCTAAGAGTGGCGGCGACGCAGGGTGGGGTAGAGATGGAAATGTTCTATTTTGACTCAAAGATGATTGATTGGGAAGTTTATTTCATGAACATACATATCCCTGGCCTCATTAAGTACGTTCTCAAGTGA 1323 0.421 MKGRGHNRGVFKYRYVYSEGRTFQSFGQRTDSDHRPLVAKPNVKKLYLLLRASDNISATRRLNDEIIGKELFKLLKENHGAEFNSFISKKVTLVPGDISLDDLNIKDSVLKEEICSQTDSIVNLAATTKFDERYDVALGLNTFGAKNVLSFAKECNKLKVLAHVSTAYVCGEKGGLIAEDPYKMGESLNGVSGLNIDAEKKLVRETLKRLQDEGTTEYEIKVAMKELGLKRTMDSLIVAYGKGKLTCFPAEIDAVFDAIPADMVVNAMLVAMVAHANESNEIIYHVGSSMRNPVRYSNLIDYALRYFTSKPLRNKDGEIVKVGNVTVLNSMDSFRTYMFIRYMLLLKGLELANKAFCQYFRGKYLNLSRQIQIVMRLVDLYRPYLFFNGVFDNMNTEKLRVAATQGGVEMEMFYFDSKMIDWEVYFMNIHIPGLIKYVLK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1082 440 CDD FAR_C 340 439 IPR033640 -
Lele11g1082 440 Pfam Male sterility protein 342 440 IPR033640 -
Lele11g1082 440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 306 IPR036291 -
Lele11g1082 440 Gene3D - 231 332 - -
Lele11g1082 440 Gene3D - 35 218 - -
Lele11g1082 440 PANTHER MALE STERILITY PROTEIN 2-RELATED 38 231 IPR026055 GO:0080019
Lele11g1082 440 Pfam Male sterility protein 39 211 IPR013120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1082 Lele-ChrLele11 18075413 18079685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1082 117 439 Acyl Lipid Metabolism Gene Families AT4G33790 51.989 1.17e-129 378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1082 11 18075413 18079685 Lele29g0335 29 2036048 2036352 CCT
Lele11g1082 11 18075413 18079685 Lele31g1205 31 18446928 18447232 CCT
Lele09g1083 09 20022099 20025661 Lele11g1082 11 18075413 18079685 hybridization
Lele10g1050 10 21800390 21803854 Lele11g1082 11 18075413 18079685 hybridization