Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0701 ATGACCAAGAAGGAGAAGAAAGTGAACGTCTCCGGAAAACCAAAGCACTCGCTCGATGCGAACAGGAGCAATGACAAAAAGAGCTCTTCGAATTCGCGTAGCGCCGCTACAGTGCGGCGGCTTAATATGTACAATACCAGACCCGTGCGGGATCGTAAAGGGAAAATCTTGAGGAACGAGTTTCAATCAAAGGAACTGCCGAGTACACGAATTCAACCCGACCGCCGATGGTTTGGAAACACTCGGGTTGTAAATCAAAAGGAGCTTGAATTTTTCCGAGAGGAGCTTCAAAATCGCATGTCAAGTAATTACAATGTCATACTGAAAGGAAAGAATCTGCCAATGTCTCTCCTGAACGATCGCCAAAAGCAAGCAAGAGTTCACCTTCTTGATAGAGAGCCTTTTGAGGATGCATTTGGACCTAAGACAAAAAGGAAGCGCCCAAACCTCTTGGCAGCTGATTATGAATCCCTAGCTAAGAAAGCTGATGGTTCTCAAGAGGCTTTTGAAGAGAAGTATGGTGCTAGTGTATCTGCAGAAGGTAATGATGATGCTGGATTTAGGGATTTAGTGCGGCATACAATGTTTGAAAAAGGTCAAAGTAAACGTATATGGGGAGAACTCTACAAAGTCATAGATTCTTCTGATGTTGTTGTCCAGGTTTTAGATGCAAGGGACCCGCAAGGCACAAGATGTTGCCATTTAGAGAAGCATTTGAAGGAAAACTGCAAGCACAAGCACATGGTTCTTTTGCTAAACAAGTGCGATTTAGTTCCTGCTTGGGCAACAAAGGGGTGGCTTAGAGTTTTGTCAAGAGAGTATCCTACTCTAGCCTTCCACGCCAGTATTAACAAGTCCTTTGGAAAGGGTTCACTTCTGTCAGTTTTGAGACAATTTGCCCGATTAAAAAGTGACAAGCAAGCAATTTCTGTGGGATTCATTGGATATCCAAATGTTGGGAAGTCTTCAGTGATCAACACATTACGTACAAAGAATGTCTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCAATACATAACTCTTACGAAGAGAATCTTTTTGATTGACTGCCCTGGTGTTGTTTATCAGAACAAGGATTCTGAAACAGATATTGTGCTGAAGGGTGTGGTACGCGTGACAAACTTGCAAGATGCTTCAGAACATATAGGTGAAGTTTTAAAACGTGTGAAGAAGGAGCATTTGGAAAGGGCATATAAGATATCGCAATGGGATGATGAGAATGACTTTCTAGTTCAGCTTAGCAAAGCAACTGGCAAACTCTTAAAGGGTGGAGAACCTGACCTGATGACTGCAGCTAAGATGGTGCTTCATGATTGGCAGAGGGGCAGGATTCCCTTTTTCGTTCCCCCACCACGCAAGGATGACTTATCTGAGGAAGAACCCAATGTTAATGGTGTAGATGTTGACACCGGTGTTGACAGCAATCAGGCATCTGCCGCTCTTAAAGCCATAGCAAATGTTCTTTCATCTCAGCAGCAAAGAAGTGTACCTGTTCAGAGGGATTTATTTAGCGAGAATGAGTTGGAGGAGGAGACTGCAGACCAACTTCCCAGCTCTCAGGAGTTGGAGGAGACTGCAGACCAACTTCCCAACACTCAGGATAATACGGTTGAAGAGATTACAACTCCTAATAGTGACTCGGCTGATCAAAGTCCAGTTCAGCTTGGATTGAATGCTGATGAGCAGGTTCCAACTAGCGAGTCATAA 1737 0.4404 MTKKEKKVNVSGKPKHSLDANRSNDKKSSSNSRSAATVRRLNMYNTRPVRDRKGKILRNEFQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQNRMSSNYNVILKGKNLPMSLLNDRQKQARVHLLDREPFEDAFGPKTKRKRPNLLAADYESLAKKADGSQEAFEEKYGASVSAEGNDDAGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCCHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLQDASEHIGEVLKRVKKEHLERAYKISQWDDENDFLVQLSKATGKLLKGGEPDLMTAAKMVLHDWQRGRIPFFVPPPRKDDLSEEEPNVNGVDVDTGVDSNQASAALKAIANVLSSQQQRSVPVQRDLFSENELEEETADQLPSSQELEETADQLPNTQDNTVEEITTPNSDSADQSPVQLGLNADEQVPTSES 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0701 578 PRINTS GTP1/OBG GTP-binding protein family signature 311 331 IPR006073 GO:0005525
Lele11g0701 578 PRINTS GTP1/OBG GTP-binding protein family signature 357 372 IPR006073 GO:0005525
Lele11g0701 578 FunFam Nucleolar GTP-binding protein 2 368 458 - -
Lele11g0701 578 MobiDBLite consensus disorder prediction 1 23 - -
Lele11g0701 578 MobiDBLite consensus disorder prediction 24 38 - -
Lele11g0701 578 MobiDBLite consensus disorder prediction 459 481 - -
Lele11g0701 578 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 205 366 IPR030378 GO:0005525
Lele11g0701 578 Gene3D - 366 458 IPR023179 -
Lele11g0701 578 Gene3D - 195 365 IPR027417 -
Lele11g0701 578 CDD NGP_1 207 363 - -
Lele11g0701 578 FunFam Nuclear/nucleolar GTPase 2 204 366 - -
Lele11g0701 578 Pfam NGP1NT (NUC091) domain 43 167 IPR012971 -
Lele11g0701 578 Pfam 50S ribosome-binding GTPase 311 377 IPR006073 GO:0005525
Lele11g0701 578 PANTHER GTP-BINDING PROTEIN-RELATED 27 545 - -
Lele11g0701 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 405 IPR027417 -
Lele11g0701 578 MobiDBLite consensus disorder prediction 528 578 - -
Lele11g0701 578 MobiDBLite consensus disorder prediction 1 38 - -
Lele11g0701 578 MobiDBLite consensus disorder prediction 517 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0701 Lele-ChrLele11 6654298 6660057 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0701 11 6654298 6660057 Lele11g0701 11 6654298 6660057 ECH
Lele09g0691 09 5246890 5252540 Lele11g0701 11 6654298 6660057 hybridization
Lele10g0630 10 4649166 4652926 Lele11g0701 11 6654298 6660057 hybridization