LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele10g1231	ATGAGAAGCGTGCATTCCGTTTGCAGCGAGATGGGTAGCCCCAAGAAGAATGAAAACAAGGGCTTTTTCGCTTCAATGAGTTCTAGCCTCTCCATTTTCAGCAACGCTATGCACCGATCCGTCAATGGGCTCTTAGGATATGAAGGGGTTGAAGTTATAAATCCTGAGGGAGGTAAAGATGATGCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAAATGGAGGAAAGAGAGAAAGATGGCAGAGGTTTGTGTAACTTCCATTACTCCTACTTGTTGGATCGAGCAGATGAATGTGAGGATCCTTGCATGCGACTGGTGTACGCCTCATCATGGGCTGTATCTGTGTACTTTGCATATCAACGAACCTGGAAGCCTTTTAATCCCATCCTAGGAGAGACTTATGAAATGGTTAACCATGGTGGAGTTACATTTCTTGCAGAACAGGTGAGCCACCATCCTCCAATGAGCGCTGGGCATGCAGAGAACGAGCATTTTACATATGATGTGACTTCAAAGTTAAAAACTAAGTTTTTGGGAAACTCTGTTGATGTTTACCCTGTTGGAAGAACCCGTGTGACCCTCAAGAGGGATGGTGTAGTTTTAGATTTGGTTCCACCTCCTACAAAGGTCAACAACCTAATATTTGGTCGAACATGGGTCGATTCACCTGGAGAAATGTTAATGACAAATTTGACTACTGGAGACAAAGTTGTGCTGTACTTTCAACCATGTGGATGGTTTGGAGCTGGTCGCTATGAAGTGGATGGATATGTTTATAATTCTGCTGAAGAGCCTAAAATATTAATGACAGGGAAGTGGAATGAATCGATGAGTTATCAACCTTGTGATTTGGAGGGAGAGCCTCTTCCAAATACAGAACTCCAAGAGGTTTGGCATGTTGCTGATGTTCCACATAATGATAAATTCCAGTATACCTATTTTGCACACAAAGTAAACAGCTTCGACACTGCCCCTCGCAAGTTGTTGGCATCAGACTCTCGTCTACGCCCAGATAGATACGCACTTGAGATGGGTGATTCATCCAAAGCCGGGGCAGAGAAAAGCAGTTTGGAGGAGAAGCAACGTGCGGAGAAGAGAACTCGAGAGGCTGAAGGGCATAACTTCACAGCAAGATGGTTTGATCTAACTGAAGAAGTGACATCTACCCCATGGGGTGATTTGGAAATCTACAAATATAATGGGAAATACACTGAACATCGGGTAGCTATAGATAACTCAGGCAGCTCTGACGAAGTTGATGTTAAATCAATAGAATTCGATCCATGGCAGTATGCTCTTTATTCTATCTCAAGTGATCCTAGTATCTTGACTGTAGATGTGGAATCTCTTGCATGGCGCCTGGTATATATGCGTTGGCGTCGAGCTAGTGCTGTTTGTGCCCTTTTCTTTTAA	1413	0.4395	MRSVHSVCSEMGSPKKNENKGFFASMSSSLSIFSNAMHRSVNGLLGYEGVEVINPEGGKDDAEEEAQRGRWKMEEREKDGRGLCNFHYSYLLDRADECEDPCMRLVYASSWAVSVYFAYQRTWKPFNPILGETYEMVNHGGVTFLAEQVSHHPPMSAGHAENEHFTYDVTSKLKTKFLGNSVDVYPVGRTRVTLKRDGVVLDLVPPPTKVNNLIFGRTWVDSPGEMLMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYNSAEEPKILMTGKWNESMSYQPCDLEGEPLPNTELQEVWHVADVPHNDKFQYTYFAHKVNSFDTAPRKLLASDSRLRPDRYALEMGDSSKAGAEKSSLEEKQRAEKRTREAEGHNFTARWFDLTEEVTSTPWGDLEIYKYNGKYTEHRVAIDNSGSSDEVDVKSIEFDPWQYALYSISSDPSILTVDVESLAWRLVYMRWRRASAVCALFF	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele10g1231	470	FunFam	oxysterol-binding protein-related protein 3C	131	308	-	-
	Lele10g1231	470	MobiDBLite	consensus disorder prediction	343	370	-	-
	Lele10g1231	470	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	84	407	IPR000648	GO:0008289
	Lele10g1231	470	SUPERFAMILY	Oxysterol-binding protein-like	84	417	IPR037239	-
	Lele10g1231	470	ProSitePatterns	Oxysterol-binding protein family signature.	147	158	IPR018494	-
	Lele10g1231	470	FunFam	Oxysterol-binding protein-related protein 3C	339	432	-	-
	Lele10g1231	470	Gene3D	-	131	308	-	-
	Lele10g1231	470	MobiDBLite	consensus disorder prediction	352	370	-	-
	Lele10g1231	470	Coils	Coil	59	79	-	-
	Lele10g1231	470	Pfam	Oxysterol-binding protein	85	407	IPR000648	GO:0008289
	Lele10g1231	470	Gene3D	-	339	440	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele10g1231	Lele-ChrLele10	23386974	23392404	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele30g1281	30	15332311	15333582	Lele10g1231	10	23386974	23392404	CCT
	Lele10g1231	10	23386974	23392404	Lele11g1259	11	19544506	19549453	hybridization
	Lele10g1231	10	23386974	23392404	Lele12g0065	12	570288	575802	hybridization