Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0770 ATGAATGATGATCAGAAACCGCAGCAAGCAGGCGGTGTTCGGTCCGGTCGAACCAATGGGTTTTTTCCCAGCTCGCTCCGGGCTATCTCCAGCTACCTCAGGGTCGTTTCCTCCGGTGCTTCCAACGTTGCGCGTTCGGCAGCATCAGTTGCGTCCTCGATCGTGGATAGGGATGATGACGCCAGTTCTGATCAGGTCATCTGGGCTGGTTTGGATAAACTAGAGGGTGAGGGAGAAGTCACCCGTCAAGTTCTACTTCTAGGATTTCGATCTGGCTTCCAGGTTTGGGATGTTGAAGATTCACATAATGTACATGACCTAGTTTCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGTTGCCAAATCCAATTGCATCGAAGAGATCAGCAGAAAAGTTTGCAAACAGCCGCCCACTGTTAGCTGTATGTGCTGACGGTTTCTTTGCTGGAGGCAGTAATGTTCAGGATGGACTGACCACCCCTTACAATGGGAGCATTTCCAATTTCCATGAGCAATCAAATGGAAATTATCTGCCAACGACTGTTCAGTTTTATTCCATGAGATCCCAATCATATGTCCATGCGCTAAAATTTAGATCAGTTGTTTATTCTGTAAGGTGCAGTTCTCGAATAGTTGCTGTTTCTCAATCAACTCAGATACACTGTTTTGATGCTGCAACATTAGAAAGAGAGTATACTATACTTACCAATCCTATAGTTGTAAGTTGTCCTGGTTCTGGAGGTGTAGGCTATGGACCACTTGCAGTGGGTTCAAGATGGCTGGCTTATAGTGGAAGTCCAGTCACAATATCTAATTCTGGGCATGTCAATCCACAAGACTTGACCACTTCAGCAAGCTTTCCTGGTTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAATCAAGCAAGCAACTTGCTTCTGGGATTGTATCCCTTGGAGATATGGGGTATAAGAAACTTTCCAGATACTACTCTGAGCTTCAGTCTGATAGCAATAGTTCGTCACGATCTGTAAATTCAGGTTGGAAGGGCAATGGAACGATTAATGGACATTCAGCAGATGCTGACAACGTTGGAATGGTCATTGTAAGGGATATTGTCAGTAAAAATGTAGTTACTCAAATGCGAGCCCACAAAAGTCCTATTTCAGCCTTACGCTTTGATCCCAGTGGAACCATTTTGGTCACTGCTTCGGTTCAGGGGCATAATATAAATGTATATAAGATAATGCCTTGTCACTCAGAGGCAGCTGATGCTGGCCCTTCTAACGTTCATCTCTACAGGTTGCAACGTGGCTATACTAATGCAATAATACAGGATATTAGTTTCAGTGATGACAGCAATTGGATTATGATAAGTTCCTCTAGGGGCACTAGTCATCTATTTGCTATAAATCCTCAGGGAGGATCTGTGAATATTCAAGCCCTTGATTGTAGTCTTTTAACACAAAATAATGGATTGAGCGGTATTACTAATCAAGGAGTCCTTTATCCTCATAGTTCAGCCTTGCAAATGCATAAAAAGCAGAGCCTGTGTGCAGCTGGCCCACCAATCACTCTTTCTGTTGTTAGCAGAATTAGGAATGGAATGAATGGCTGGAGAGGCACCGTGAGCGGTGCTGCTGCAGCTGCTACAGGAAAGACGGGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCTGTAACTGCAAGAACAGTGGCATATATATTGATGGGAAGCATTCCAAGACAAAGTATCACTTGTTGGTTTTTTCATCCTCTGGTTCTATGATACAATATGCTCTCCAGATGTTAAATGGTCGAGATTCAGCTATTGTTTCGGGATTAAACCCGGCTTATGAATTACACCCACAAGCTGATGCAAGATTAGCAGTGGAAGCTATTCAGAAATGGAATATATGTCAAAGACTAAGTTTGCGGGAGCGAGAAGATAACGTTGACATTTATGGTGATAATGGAATTCCTGACGGCAATAAAATTTATCCTGAAGAATCGAAAGAGGACACTATCAGTAGCCCAAAATTCAAGAATGAAGTTGTGAAAGCTAATTCCTCTTCAGAGGAAGATCGTCATCTATATATTTCCCAAGCTGAACTGCAGATGCACCAGGCTCAGACTCCATTGTGGGCGAAGTCTGAGATATATTTTCATTCAATGGTGAAAGAAGCTACCATAATAGATGAAGCAGCTGCTGCAGGAGGGGAATTTGAGATTGAAAGGATTCCAACTCGCATGGTTCAAGCTAGGTCAAAACACTTAATTCCTGTTTTTGACTATCTTCAGACCCCAAAAGCCCAACAAACAAGGTTAAATGAACAATTGTTACATCAGAGTAGTGGGATGTCTGAAAATGTCAAGATTTCAGACTATACAACAAACTCTACTGAATTGGACCATGGCATTCAAGTACCTGGGTTGGATGATCATCTTCTGCCAACAAAAGTCAGAGGCTATAGAAGGCCTGCTAATGGGGAATCACATTGA 2493 0.4288 MNDDQKPQQAGGVRSGRTNGFFPSSLRAISSYLRVVSSGASNVARSAASVASSIVDRDDDASSDQVIWAGLDKLEGEGEVTRQVLLLGFRSGFQVWDVEDSHNVHDLVSRHDGPVSFMQMLPNPIASKRSAEKFANSRPLLAVCADGFFAGGSNVQDGLTTPYNGSISNFHEQSNGNYLPTTVQFYSMRSQSYVHALKFRSVVYSVRCSSRIVAVSQSTQIHCFDAATLEREYTILTNPIVVSCPGSGGVGYGPLAVGSRWLAYSGSPVTISNSGHVNPQDLTTSASFPGFSSNGSLVAHYAKESSKQLASGIVSLGDMGYKKLSRYYSELQSDSNSSSRSVNSGWKGNGTINGHSADADNVGMVIVRDIVSKNVVTQMRAHKSPISALRFDPSGTILVTASVQGHNINVYKIMPCHSEAADAGPSNVHLYRLQRGYTNAIIQDISFSDDSNWIMISSSRGTSHLFAINPQGGSVNIQALDCSLLTQNNGLSGITNQGVLYPHSSALQMHKKQSLCAAGPPITLSVVSRIRNGMNGWRGTVSGAAAAATGKTGSLSGAIASSFCNCKNSGIYIDGKHSKTKYHLLVFSSSGSMIQYALQMLNGRDSAIVSGLNPAYELHPQADARLAVEAIQKWNICQRLSLREREDNVDIYGDNGIPDGNKIYPEESKEDTISSPKFKNEVVKANSSSEEDRHLYISQAELQMHQAQTPLWAKSEIYFHSMVKEATIIDEAAAAGGEFEIERIPTRMVQARSKHLIPVFDYLQTPKAQQTRLNEQLLHQSSGMSENVKISDYTTNSTELDHGIQVPGLDDHLLPTKVRGYRRPANGESH 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0770 830 Pfam Breast carcinoma amplified sequence 3 519 758 IPR022175 -
Lele09g0770 830 FunFam Breast carcinoma-amplified sequence 3 291 519 - -
Lele09g0770 830 SMART WD40_4 372 412 IPR001680 GO:0005515
Lele09g0770 830 SMART WD40_4 190 225 IPR001680 GO:0005515
Lele09g0770 830 SMART WD40_4 426 467 IPR001680 GO:0005515
Lele09g0770 830 Gene3D - 81 494 IPR015943 GO:0005515
Lele09g0770 830 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 15 789 IPR045142 GO:0006914
Lele09g0770 830 SUPERFAMILY WD40 repeat-like 83 469 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0770 Lele-ChrLele09 6046777 6052097 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0770 09 6046777 6052097 Lele09g0770 09 6046777 6052097 ECH
Lele09g0770 09 6046777 6052097 Lele11g0772 11 7782658 7789730 hybridization
Lele09g0770 09 6046777 6052097 Lele12g0566 12 14109627 14114893 hybridization