Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0688 ATGGCTCTCCAGGCAGCTGCTTCCCTGGTTTCTGCTTCTTTCTCCATTCCTAAAGAGGGAAAATCTGGTGTTTCTCTCAAGGACTCTGCCCTATTTGGGCTTTCATTATCAGATAATCTCAGAGCTGACTTCAGCTCTAGTGCATTGAGATGCAAGCAAAAAGTAGGAGCTGTGAGGGCCCAGACGGTGGCTACTACAACTCCAGCAGTTAACAAGGCTTCAACTGAAGGCAAGAAAACTCTGAGGAAGGGAAGTGTTGTGATAACTGGGGCCTCCTCTGGTTTGGGTCTGGCTACTGCTAAGGCTTTGGCTGAAACAGGAAAATGGCATGTGATTATGGCCTGCAGGGACTTCCTCAAAGCCGAAAGAGCCGGCAAGTCGGCCGGCATGCCAAAGGAAAACTACACCATTATGCACTTAGACCTTGCCTCTCTCGACAGTGTCCGTCAATTTGCTGATAGCTTCAAGCGATCCGGCAGACCACTCGATGTTCTGGTCTGCAATGCTGCTGTTTACTTGCCAACTGCTAAGGAACCTACATTTACTGCTGAAGGATTTGAGCTCAGTGTTGGGACAAACCATCTGGGGCATTTTCTCCTTTCACGCTTGCTGCTCGAGGACTTGAACAAATCTGATTATCCTTCAAAGCGCTTGATCATCGTGGGCTCAATCACAGGAAACACAAACACACTGGCCGGAAACGTGCCTCCCAAGGCAAACCTGGGTGACTTGAGGGGACTTGCAGGTGGATTGAATGGACTAAACACTTCATCTATGATTGATGGTGGAGATTTCGATGGCGCCAAGGCGTACAAGGACAGCAAAGTCTGTAATATGCTCACCATGCAAGAGTTCCATCGAAGGTACCATGAGGAAACCGGGATCACATTCGCTTCCCTGTACCCGGGTTGCATAGCCACGACCGGCTTGTTCAGAGAACACATTCCATTGTTCAGACTTTTGTTTCCTCCATTCCAAAAATACATAACCAAGGGCTATGTCTCAGAAGATGAAGCAGGAAAAAGACTTGCTCAGGTTGTGAGTGATCCAAGTCTGACAAAATCTGGTGTTTACTGGAGCTGGAATAAGGCCTCTGCTTCATTTGAAAACCAGTTGTCACAAGAGGCTAGTGATCCAGAGAAGGCTCTCAAGGTGTGGGAGATCAGTGAGAAACTTGTTGGCTTGGCTTAA 1191 0.4811 MALQAAASLVSASFSIPKEGKSGVSLKDSALFGLSLSDNLRADFSSSALRCKQKVGAVRAQTVATTTPAVNKASTEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAGKSAGMPKENYTIMHLDLASLDSVRQFADSFKRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNTSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDPEKALKVWEISEKLVGLA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0688 396 Pfam short chain dehydrogenase 86 228 IPR002347 -
Lele09g0688 396 PRINTS Glucose/ribitol dehydrogenase family signature 293 310 IPR002347 -
Lele09g0688 396 PRINTS Glucose/ribitol dehydrogenase family signature 160 171 IPR002347 -
Lele09g0688 396 PRINTS Glucose/ribitol dehydrogenase family signature 85 102 IPR002347 -
Lele09g0688 396 CDD LPOR_like_SDR_c_like 83 395 - -
Lele09g0688 396 Gene3D - 70 396 - -
Lele09g0688 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 363 IPR036291 -
Lele09g0688 396 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 396 IPR005979 GO:0016630
Lele09g0688 396 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 82 396 IPR005979 GO:0016630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0688 Lele-ChrLele09 5228261 5230172 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0688 09 5228261 5230172 Lele09g0688 09 5228261 5230172 ECH
Lele09g0688 09 5228261 5230172 Lele11g0698 11 6633940 6637617 hybridization
Lele09g0688 09 5228261 5230172 Lele12g0639 12 14743861 14745805 hybridization