Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0639 ATGGCTCTCCAGTCTGCTGCTTCCTTGGTTCCTGCTGCTTTCTCCATTCCTAAAGAGGGAAAATCTGGTGTTTCTTTCAAGGACTCTGCCCTATTTGGGCTTCCATTATCAGATAATCTCAGAGCTGACTTCAGCTCTTGTGCATTGAGATGCAAGCAAAAAGTAGGAGCTGTGAGGGCTGAGACGGTTGCTACTACAACTCCAGCAGTTAACAAGGCTTCATCTGAAGGCAAGAAAACGCTGAGGAAGGGAAGTGTTGTGATAACTGGGGCCTCCTCTGGATTGGGTCTGGCTACTGCTAAGGCTTTGGCTGAAACAGGAAAATGGCATGTGATTATGGCCTGCAGGGACTTCCTGAAAGCCGAAAGAGCTGCCAAATCGGCTGGCATGCCCAAGGAAAACTACACCATTATGCACTTAGACCTTGCCTCTCTTGACAGTGTCCGTCAATTTGCTGATAGCTTGAAGCGATCGGGCAGACCACTCGATGTTCTTGTCTGCAATGCTGCAGTTTACTTGCCAACTGCTAAGGAACCTACATTCACTGCTGAAGGCTTTGAGCTCAGTGTTGGGACAAACCATTTGGGGCATTTTCTCCTTTCGCGCTTGCTGCTCGAGGACTTGAACAAATCTGATTATCCTGCAAAGCGCTTGATCATTGTGGGCTCAATCACAGGAAACACAAACACATTGGCTGGAAACGTGCCTCCCAAGGCAAACCTTGGTGACTTGAGGGGACTTGCAGGTGGATTGAATGGACTAAACAGTTCATCTATGATCGACGGTGGAGATTTTGATGGTGCCAAGGCGTACAAGGACAGCAAAGTCTGCAATATGCTCACCATGCAAGAGTTCCACCGAAGGTACCATGAGGAAACCGGGGTCACATTCGCTTCCCTTTACCCGGGTTGCATCGCCACAACGGGCTTGTTCAGAGAACACATTCCATTGTTCAGACTTTTGTTTCCTCCATTCCAAAAGTACATAACCAAGGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCCTGACAAAATCTGGTGTTTACTGGAGCTGGAATAAGGCCTCTGCTTCATTTGAAAACCAGTTGTCACAAGAGGCTAGTGATCCGGACAAGGCTCGAAAGATGTGGGAGATCAGTGAGAAACTTGTTGGCTTGACTTAA 1191 0.4794 MALQSAASLVPAAFSIPKEGKSGVSFKDSALFGLPLSDNLRADFSSCALRCKQKVGAVRAETVATTTPAVNKASSEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFADSLKRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPAKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDPDKARKMWEISEKLVGLT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0639 396 PRINTS Glucose/ribitol dehydrogenase family signature 293 310 IPR002347 -
Lele12g0639 396 PRINTS Glucose/ribitol dehydrogenase family signature 160 171 IPR002347 -
Lele12g0639 396 PRINTS Glucose/ribitol dehydrogenase family signature 85 102 IPR002347 -
Lele12g0639 396 CDD LPOR_like_SDR_c_like 83 395 - -
Lele12g0639 396 Pfam short chain dehydrogenase 86 228 IPR002347 -
Lele12g0639 396 Gene3D - 70 396 - -
Lele12g0639 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 363 IPR036291 -
Lele12g0639 396 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 395 IPR005979 GO:0016630
Lele12g0639 396 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 82 395 IPR005979 GO:0016630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0639 Lele-ChrLele12 14743861 14745805 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0639 12 14743861 14745805 Lele12g0639 12 14743861 14745805 ECH
Lele09g0688 09 5228261 5230172 Lele12g0639 12 14743861 14745805 hybridization
Lele10g0627 10 4634934 4636884 Lele12g0639 12 14743861 14745805 hybridization