Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1840 ATGTGTGTTCTAGCAAAATTGCAGAGTAGCTTGCTTGCTTCTTCATCATCACCATCTTCTTCTTCATCTTCTTCCATTGATTCACAATCTCAAGCCACCATGTTCATCATTCTGAGAAACTCATCATCACAAATCTTCCTCCTTTTACTATCTCTATCTCTTTCTCTTTCTTTATCTTCTTCAATCCCAGACTTCACAACTTGCTTGACCCACCACAACATCAACAACTTCACCAGATTCCCTGATCAATCCTCTAATAACACTTGTGATGACTATTTCAAAATCCTCAACTTCTCCATCCAAAACCCTCGTTTTGCAGAGCTTAACATCCCAAAGCCTATGGCCATTGTTCTGCCAGAGAGCTTGGAGCAGCTGAGGAACAGTGTGGTGTGCTGTAGAGAATTCTCTGTAGATATCAGAGTGAGATGTGGTGGACATAGCTATGAAGGAACTTCCTCTTTAGCCAATGATGGAGCTCCATTTGTCATCATTGACCTCATGAACCTAAACCATGTTCATGTGGACATCGAGGCTGAGATGGCATGGGTTGAAGGTGGGGCCACCTTGGGAGAGACCTACTACGCGATCTCTCGGGCTAGCAAGGCCCACGGGTTTTCAGCCGGGTCTTGCCCAACCGTGGGCGTCGGGGGTCATATCGGGGGAGGCGGGTTTGGGCTTTTGTCAAGAAAATATGGGCTTGCAGCAGATAATGTGGTGGATGCACTTCTCCTAGATGCTGATGGGAAGTTACTTAACAGACAAGAAATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGTGGGGGTGGTGTTTGGGGGATTGTATATGCCTGGAAGATCAAATTACTAAAAGTCCCAGAAACTGTTACTAGTTTCATAATCTCAAGAACAGGAACAAAAAGTCATCTTCTGAAACTAGTTAACAAATGGCAATATGTAGCACCAAAATTGGAAGATGACTATTACTTGTCATGTTTTCTTGGTGCGGGCTTTCCTGAAGCTAAGAAAACTCCAGGCTTATCTGCAACTTTTAACGGGTTTTATCTGGGTCCTAGCCACAAGGCCATAACTGTTATAAACCAGGTTTTTCCTGAACTGGGTATTGAAGAAGAAGATTGCAAAGAAATGAGTTGGATTGAGTCTATAATTTTCATCTCTGGCCTACCAAAAGGAGTCAAAGTTTCTGAATTGAAGAACAGGTATATGCAAGACAAGGAATATTTCAAGGCAAAATCAGATTTTGTGAGGAGTCATATTCCTCATGTGGGGATTGAAACTGCTTTAAAAATACTTGAGAAAGAGCCAAAAGGGTATGTAATTTTTGATCCTTATGGTGGAATTATGCAGAAAATAAGCAGTGAATCCATAGCTTTTCCTCACAGAAAAGGAAATCTCTTCACAATTCAGTATCTGATTTATTGGAAAGAAGCTGATAATGAGAGAACCAGTGAATACATTGATTGGATAAGAGAGTTCTATGATTCTATGACTCCATTTGTTTCATGGGGTCCTAGGGCTGCATATATCAATTACATGGACTTTGATCCTGGAGTAATGGTGGACCCCATTAACACAGATGAAGAAGCCAGAGTTTGGGGTGTAAAGTACTTCTTGGGTAACTATGATAGATTAGTTAAAGCCAAGACTTTGATTGATCCTAACAATGTTTTCACTCATCAACAAGGCATTCCTCCTTTATCTTCTTCTTCCATCAGTTCAATGTGA 1725 0.4139 MCVLAKLQSSLLASSSSPSSSSSSSIDSQSQATMFIILRNSSSQIFLLLLSLSLSLSLSSSIPDFTTCLTHHNINNFTRFPDQSSNNTCDDYFKILNFSIQNPRFAELNIPKPMAIVLPESLEQLRNSVVCCREFSVDIRVRCGGHSYEGTSSLANDGAPFVIIDLMNLNHVHVDIEAEMAWVEGGATLGETYYAISRASKAHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLLDADGKLLNRQEMGEDVFWAIRGGGGGVWGIVYAWKIKLLKVPETVTSFIISRTGTKSHLLKLVNKWQYVAPKLEDDYYLSCFLGAGFPEAKKTPGLSATFNGFYLGPSHKAITVINQVFPELGIEEEDCKEMSWIESIIFISGLPKGVKVSELKNRYMQDKEYFKAKSDFVRSHIPHVGIETALKILEKEPKGYVIFDPYGGIMQKISSESIAFPHRKGNLFTIQYLIYWKEADNERTSEYIDWIREFYDSMTPFVSWGPRAAYINYMDFDPGVMVDPINTDEEARVWGVKYFLGNYDRLVKAKTLIDPNNVFTHQQGIPPLSSSSISSM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1840 574 Gene3D - 173 565 IPR016169 -
Lele08g1840 574 Pfam Berberine and berberine like 507 564 IPR012951 GO:0016491|GO:0050660
Lele08g1840 574 Gene3D - 288 503 - -
Lele08g1840 574 ProSiteProfiles PCMH-type FAD-binding domain profile. 109 285 IPR016166 GO:0071949
Lele08g1840 574 SUPERFAMILY FAD-binding/transporter-associated domain-like 101 286 IPR036318 GO:0050660
Lele08g1840 574 Pfam FAD binding domain 113 251 IPR006094 GO:0050660
Lele08g1840 574 PANTHER OS08G0158400 PROTEIN 59 566 - -
Lele08g1840 574 Gene3D - 64 169 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1840 Lele-ChrLele08 12793706 12795706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1840 48 567 Miscellaneous Gene Families AT4G20820 42.776 1.15e-134 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1840 08 12793706 12795706 Lele08g1840 08 12793706 12795706 ECH
Lele05g2000 05 14263524 14265151 Lele08g1840 08 12793706 12795706 hybridization
Lele06g1841 06 12938375 12940225 Lele08g1840 08 12793706 12795706 hybridization