Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2000 ATGTTCATCATTCTGAGAAACTCATTACCAATCTTCCTCCTCTTCATATCTCTATTCCTTTCTCTTTCTTTATCTTCTTCAATCCCAGACTTCACAACTTGCCTGATCCACCACAACATCAACAACTTCACCAGATTCCCCGACCAATCTTCTAATAACACTTATGATGACTACTTCAAAATCCTCAATTTCTCCATACAAAACCCTCGCTTTGCTCAGCTTAACATCCCAAAGCCTATGGCCATTGTTCTGCCAGATAGCTTGGAGCAGCTGAGGAACAGTGTGGTGTGCTGTAGAGAATTCTCTGTAGATATCAGAGTGAGATGTGGTGGACACAGCTATGAAGGGACTTCCTCTGTGGCCAAGGATGGAGCTCCATTTGTCATCATTGACCTCATGAGCCTAAACCATGTTGAGGTGGACATGGAGGCTGAGATGGCATGGGTTGAAGGTGGGGCCACCCTAGGAGAGACCTACTACGCGATCTCTCGGGCTAGCAAGGCCCACGGATTTTCAGCCGGTTCATGTCCAACCGTGGGAGTAGGCGGGCATATCGGGGGAGGTGGGTTTGGGCTTTTGTCAAGAAAATATGGGCTTGCAGCAGATAATGTGGTGGATGCACTTCTTATAAATGCTGATGGGAAGTTACTTAACAGACAAGAAATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGTGGTGGTGGTGTTTGGGGCATTGTATATGCTTGGAAGATCAAATTACTAAAAGTTCCAGAAACTGTAACTAGTTTCATACTTTCAAGAACAGGAACAAAATATCATCTTCTGAAACTAGTTAACAAATGGCAACATGTAGCACCAAAATTAGAAGATGACTATTACTTGTCATGCTTTCTTGGTTCAGGCTTGCCTGAAGCTAAAAAAACTAAAGGATTATCTGCAACATTTAAAGGGTTTTATCTGGGTCCCAGCCACAAAGCCATGTCTGTTATAAACCAGGTTTTTGCTGAACTGGGAGCCCAAGTTTCTGAATTGAAGAACAGGTATCTGCAAGACAAGGAATATTTCAAGGCAAAATCAGATTTTGTGAGGAGTCATATTCCTTATGTGGGGATTGAAACTGCTTTAAACATACTTGAGAAGGAACCAAAAGGGCAAGTTGTTTTGGACCCTTATGGTGGAATGATGCAGAAAATAAGCAGTGAATACATAGCTTTTCCTCACAGAAAAGGAAATCTCTTCACAATTCAGTATCTGATATATTGGAAAGAAGATGATAATGAGAGAAGCAGTGAATATATTGAGTGGATAAGAGAGTTCTATGATTCTATGGCTCCATTTGTTTCATGGGGTCCTAGGGCTGCATATATCAATTACATGGACTTTGATCTTGGAGTGATGGTGTACCCCACTAACTCAAGAGAAGCAGAAGAAGAAGCCAGAGTTTGGGGTGAAAAGTACTTCTTAAGTAACTACGATAGATTGGTTAAAGCCAAGACTTTGATTGATCCCAATAATGTTTTTACTCATAAACAAGGCATTCCTCCTTTATCTTCTTCCATCAGTTCAATGTGA 1557 0.4155 MFIILRNSLPIFLLFISLFLSLSLSSSIPDFTTCLIHHNINNFTRFPDQSSNNTYDDYFKILNFSIQNPRFAQLNIPKPMAIVLPDSLEQLRNSVVCCREFSVDIRVRCGGHSYEGTSSVAKDGAPFVIIDLMSLNHVEVDMEAEMAWVEGGATLGETYYAISRASKAHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLINADGKLLNRQEMGEDVFWAIRGGGGGVWGIVYAWKIKLLKVPETVTSFILSRTGTKYHLLKLVNKWQHVAPKLEDDYYLSCFLGSGLPEAKKTKGLSATFKGFYLGPSHKAMSVINQVFAELGAQVSELKNRYLQDKEYFKAKSDFVRSHIPYVGIETALNILEKEPKGQVVLDPYGGMMQKISSEYIAFPHRKGNLFTIQYLIYWKEDDNERSSEYIEWIREFYDSMAPFVSWGPRAAYINYMDFDLGVMVYPTNSREAEEEARVWGEKYFLSNYDRLVKAKTLIDPNNVFTHKQGIPPLSSSISSM 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2000 518 Gene3D - 30 135 IPR016167 -
Lele05g2000 518 Pfam Berberine and berberine like 449 509 IPR012951 GO:0016491|GO:0050660
Lele05g2000 518 PANTHER OS08G0158400 PROTEIN 26 511 - -
Lele05g2000 518 Gene3D - 141 509 IPR016169 -
Lele05g2000 518 Gene3D - 254 445 - -
Lele05g2000 518 Pfam FAD binding domain 79 217 IPR006094 GO:0050660
Lele05g2000 518 SUPERFAMILY FAD-binding/transporter-associated domain-like 65 252 IPR036318 GO:0050660
Lele05g2000 518 ProSiteProfiles PCMH-type FAD-binding domain profile. 75 251 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2000 Lele-ChrLele05 14263524 14265151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2000 7 512 Miscellaneous Gene Families AT4G20820 39.665 1.80e-118 357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2000 05 14263524 14265151 Lele05g2000 05 14263524 14265151 ECH
Lele05g2000 05 14263524 14265151 Lele07g2047 07 13730550 13736932 hybridization
Lele05g2000 05 14263524 14265151 Lele08g1840 08 12793706 12795706 hybridization