Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1315 ATGCAAATAGATGGCTTTCCTAGAAAATTTATTGTCAACAAGCTTCTAACCACTTTTGTAGAAAGCCTTGATGTGCAATGGCTAGAAAAAGCTTATGGGTTGGTAGAAAAGGCTGTTGAGGAAGGTAAACAGAACTTGTTAGAGAAGGAAGTACTTTTGTATCTCTGCTTTGGTATTGCCAAAGCTGGACTACCTGTTCCTGCATCAACTGTCTTAAGAAAGATGATAAATACGGAGCAATTTCCCCCAGTCAGTGCGTGGTCTGCAGTTTTGGCCCACATGTCACAAACAGCAGATGGAAGTTATCTTGCTGCTGAGTTGATTCTTGAAATAAGTTATTTGTTCCAGAACAATAGAGTGGATCTACGCAAAAAGAGCAATTCACCTTTGGTAGCTATGAAGCCTGATACTACTGCTTTTAACATCGCTTTGGCAGGGTGTCTCCTATTTGATACTACTAGGAAAGCAGAGCAGCTTCTAGACTTGATGCCTCGAATTGGTGTTAAGGCTGATGCAAACTTACTAATAATAATGGCACGTGTATATGAGAAGAATGGGCGAAGAGAAGAGCTTAAGAAGTTGCGAAGGCATATAAAGGAGGCACCCAATCTTACTGATATTCAGTTTCGCCAATTCGTTAATTGTTTGCTCTCATGCCATTTGAAATTTGGGGATCTAGATTCAACATCAAACATGGTCCTGGAAATGCTAAAGAAATCAAAGGAGGCAAAAAATTCTCTTGCAGCTGCTAAATTTATAAGTCACGCCACTGATGTTAGTCATAAATATTCTCCTGGACTTGCTTCTATGCCAAGTTCGAGTGACGGTAAGGATTCAGACTGTTTAGAATACGACAAACCAATGAGAAACACCATCCTATCTTACGAAGAGTTCTCTGGAGATCGGAATTTCTTAAAAATTGAAGCAGAGTCAAAGGCTGTTCTTGGTTCTCTGTTAGCCAAGTTGCAGACACAGGTTGACTTGATTACAACAAAGCATGGTATACTCCAACCAACTGAATCAATTTATGTGAAACTTGTTAAAGCTTTTCTAGAAGTTGGCAAGACCAAGGATTTGGCAGAGTTTCTAATCAAGGCAGAAAGAGAAGGTTCCCCGCTTTCCAATGATAGTTCAATATTGGTTCATGTCATTAATTCATGTATTTCACTCGGATGGTTGGATCAAGCACATGACCTTCTTGATGAGATGCGAATAGCTGGAATTAAAACTGGCTCATCTGTGTATGCCTCTCTCTTGAAAGCCTATTGTCAAGCAAATAAGGCTGCAGAAGTCACTTCACTTTTAAGAGATGCAAGGAAGGATGGTATCCAGCTGGACTCTAGTTCTTATGAGGCGATGATCCAATCCAGGGTGCTTCAGGAGGATACAAAGGGAGCACTCCGTTTATTCAAAGAGATGAAAGTGGCTAAAATTCCAAAAGTTGGACAGCAAGACTCTATCATGCAAGCTAAAAGTCATGTACAGAAAGATGAATCTGGTTTGATGACGAATCTGTTGCAGGAAATCAAAGAAGGACAGAAAGTGAATTATGGGGTTCATGACTGGAATAATGACACGTTACCTGACACTTGTCCTCGTGCATGTCATCCATTATTCCATCACATTCTCATACCATTTCTCTCCCTATATAAATCCCATGCTCACTCTTGTGCATCAAAGCCTGTACTCAGAACTTTGTCGTCGTTCTTCAACAAATCGGCCATGATGAACACCAAGCTCCCTCTAATTCTCTTGTTGTTCTCCCTTATATCCTTGTCTGCATGTTCGGCACTGTCCACACAAGAAACAGAGGTAGACCCTGAGCTTAAAACATGCAAACACCAGTGCAGCCAGCAGCAGCAATACAGCGAGAGTGACAAGCGTAAATGTTTTAACAGATGTGAGAGTTATCATCGGAAGAAGAAGGACCGAGAGAGAGAAATAGAAGAGCAAGTCCGGAGAAGGAAAGAGCATGAGATGGAAGAAAAGGGAGGCCAACAACAAGAAGAAGAAGGGTATGAGGAGGAGGAGGAAGATGGAAATCCTTTTGTTTTCGGCGATGAACAGTTTGAGAGCAGAGTCGAGACAGAGGATGGCTCAGTTCGGGTTCTCCAGAAGTTTACAGAAAGATCTAAGCTTCTTCGGGGCATTGAGAATTTTCGTTTGTCTGTTTTAGAAGCTCAACAACATAGTTTTGTCTCTCCATGTCATTTCGATTCTGAGCTCATTATCTTCACCATCAGAGGGCGAGCTACCATCGGGTTGGTGAATGCAGACAAAACAGAAAGATTCAATCTTGAACCAGGAGACATCATGAGGGTACCATCGGGCACCCCATTTTACATTGTCAACAGAGATGAATATGAGAAGCTCGTTCTTGCCAAGTTCCATATCACTGTCTCCATCCCAGGACATTATGAGGCATTTTATGGGCCTGGTGGACGAGACCCAGAATCAGTTTTGGAAGCATTCAGCTGGGGCGTACTTGAAGCTTCATTCAAGAGGCAGAAGGGGAACCTGGAGAGGCTGTTTGGAAGGCAAAAGAAGGGAAGCATTTTCAGAATATCGAGAGATCAAGTGAAGTCCCTGAGCAAGGGCTGGTACGTGTGGCCGTTCGGAGGGCAATGGGGGGGTCCATTCAATCTCTTCCGGAACAAACTCTCTGTTTCCAACGACTACGGTCGTCTCTATGAAGTGGGTCCTCAAGACAAGAAGAGCGGCCTTGAAAACCTCGATCTCATGATCACCTTCGCAAACATCACAAACGGATCGATGTCGGCTCCTCTGTACAACTCGAAGGCAATCAAGATAGGAATGGTAACTGAAGGAGAAGGGGAATTTGAGATGGTGACCCCACATATGTCACGAGGACACCAGAAGAAGAGCAGCCCAAGATACGAGAGGGTGAGTAGCTGGTTAAGGCCGGGAGTGGTGTTCGTGGTGCCAGCAGGGCATCCCTATGTGACCATGGCTTCAAGGGAAAGCAACCTGCAAATAGTGTGCTTTGAGATGAATGCAAGAGGGAACACGAAGCTGAGTTTTGCAGGGAAGAGGAACATAGTGAAAACGATGGACAAGCAGGCGAAAGAATTGGCGTTCAACTGGCCGGCGCAGAAGGTGGACGACATATTCAGCAGAGAAGAGGATTTCTTTTTCCCTGGGCCTCACAGTTTCGAGGAGGAGGAGGGTCGTGCTGAAGCGTAA 3204 0.4398 MQIDGFPRKFIVNKLLTTFVESLDVQWLEKAYGLVEKAVEEGKQNLLEKEVLLYLCFGIAKAGLPVPASTVLRKMINTEQFPPVSAWSAVLAHMSQTADGSYLAAELILEISYLFQNNRVDLRKKSNSPLVAMKPDTTAFNIALAGCLLFDTTRKAEQLLDLMPRIGVKADANLLIIMARVYEKNGRREELKKLRRHIKEAPNLTDIQFRQFVNCLLSCHLKFGDLDSTSNMVLEMLKKSKEAKNSLAAAKFISHATDVSHKYSPGLASMPSSSDGKDSDCLEYDKPMRNTILSYEEFSGDRNFLKIEAESKAVLGSLLAKLQTQVDLITTKHGILQPTESIYVKLVKAFLEVGKTKDLAEFLIKAEREGSPLSNDSSILVHVINSCISLGWLDQAHDLLDEMRIAGIKTGSSVYASLLKAYCQANKAAEVTSLLRDARKDGIQLDSSSYEAMIQSRVLQEDTKGALRLFKEMKVAKIPKVGQQDSIMQAKSHVQKDESGLMTNLLQEIKEGQKVNYGVHDWNNDTLPDTCPRACHPLFHHILIPFLSLYKSHAHSCASKPVLRTLSSFFNKSAMMNTKLPLILLLFSLISLSACSALSTQETEVDPELKTCKHQCSQQQQYSESDKRKCFNRCESYHRKKKDREREIEEQVRRRKEHEMEEKGGQQQEEEGYEEEEEDGNPFVFGDEQFESRVETEDGSVRVLQKFTERSKLLRGIENFRLSVLEAQQHSFVSPCHFDSELIIFTIRGRATIGLVNADKTERFNLEPGDIMRVPSGTPFYIVNRDEYEKLVLAKFHITVSIPGHYEAFYGPGGRDPESVLEAFSWGVLEASFKRQKGNLERLFGRQKKGSIFRISRDQVKSLSKGWYVWPFGGQWGGPFNLFRNKLSVSNDYGRLYEVGPQDKKSGLENLDLMITFANITNGSMSAPLYNSKAIKIGMVTEGEGEFEMVTPHMSRGHQKKSSPRYERVSSWLRPGVVFVVPAGHPYVTMASRESNLQIVCFEMNARGNTKLSFAGKRNIVKTMDKQAKELAFNWPAQKVDDIFSREEDFFFPGPHSFEEEEGRAEA 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1315 1067 SUPERFAMILY RmlC-like cupins 681 862 IPR011051 -
Lele08g1315 1067 MobiDBLite consensus disorder prediction 645 667 - -
Lele08g1315 1067 Coils Coil 641 661 - -
Lele08g1315 1067 MobiDBLite consensus disorder prediction 645 684 - -
Lele08g1315 1067 SMART Cupin_1_3 683 861 IPR006045 -
Lele08g1315 1067 SMART Cupin_1_3 880 1041 IPR006045 -
Lele08g1315 1067 Gene3D Jelly Rolls 874 1057 IPR014710 -
Lele08g1315 1067 CDD cupin_7S_vicilin-like_C 888 1049 - -
Lele08g1315 1067 MobiDBLite consensus disorder prediction 668 684 - -
Lele08g1315 1067 Pfam PPR repeat 383 408 IPR002885 -
Lele08g1315 1067 Gene3D Tetratricopeptide repeat domain 327 524 IPR011990 GO:0005515
Lele08g1315 1067 Gene3D Tetratricopeptide repeat domain 10 273 IPR011990 GO:0005515
Lele08g1315 1067 Gene3D Jelly Rolls 672 864 IPR014710 -
Lele08g1315 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Lele08g1315 1067 SUPERFAMILY RmlC-like cupins 879 1055 IPR011051 -
Lele08g1315 1067 Pfam Cupin 722 796 IPR006045 -
Lele08g1315 1067 Pfam Cupin 880 1035 IPR006045 -
Lele08g1315 1067 PANTHER BNAC05G43320D PROTEIN 2 524 - -
Lele08g1315 1067 CDD cupin_7S_vicilin-like_N 693 866 - -
Lele08g1315 1067 Pfam Pentatricopeptide repeat domain 433 478 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1315 Lele-ChrLele08 8401956 8406640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1315 740 1034 Miscellaneous Gene Families AT2G18540 23.988 1.30e-13 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1315 08 8401956 8406640 Lele08g1315 08 8401956 8406640 ECH
Lele05g1463 05 9395538 9404989 Lele08g1315 08 8401956 8406640 hybridization
Lele06g1321 06 8463895 8467626 Lele08g1315 08 8401956 8406640 hybridization