Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1321 ATGATTAGGAATCCGCATCACCATTCTAAAATCACTGCCTCTCCACTTATGAGTTGCAGAAGCATGCTTGTGCGTGCTATTGCAGCTCCTGTTATATTTTCTTGCTCAAATTTTTCTTCTACCTTTTCTGGTTATTTAGAGGGCCGTCCTGATATGGGCTGGAAAGCAGCTGCGAAACTAATTAGGCACTGGAAGATTCTCAGAGGGGACAATGTAATGATTATAAGGGGCAAGGATAGAGGCAAGATAGGGATTATCAAGCGCACGATTCACTCTGGGAATCGTGTAATTGTTGGGGCCAAAAATCAGATGGCTTTCATTGTCAACAAGCTTCTAACCACTTTTGTAGAAAGCCTTGATGTGCAATGGCTAGAAAAAGCATATGGGTTGGTAGAAAAGGCTGTTGAGGAAGGTAAACAGAAATTGTTAGAGAAGGAAGTACTTATGTATCTCTACTGTGGTCTTGCCAAAGCTGGACTACCGGTTCCTGCATCAACTGTCTTAAGAAAGATGATAAATTCGGAGCAATTTCCCTCAGTCAGTGCGTGGTCTGCAGTTTTGGCCCACATGTCACAAACAGCAGATGGAAGTTATCTTGCTGCTGAGTTGATTCTTGAAATAAGTTATTTGTTCCAGAAAAATAGAGTGGATCCACGCAGAAAGAGCAATTCACCTTTGGTAGCTATGAAGCCTGATACTACTGCTTTTAACATCGCTTTGGCAGCGTGTCTCCTATTTGAGACTACTAGGAAAGCAGAGCAGCTTCTAGACGCGATGCCTCGAATTGGTGTTAAGGCTGATGCAAACTTACTAATAATAATGGCACATTCAACATCAAACGTGGTCCTGGAAATGCTAAGGAAATCAAAGGAGGCAAAAAATTCTCTTGCAGCTACTAAATTTACAAGTCACGCAACTGAAGTTAGTCATAAATATTCTCCTGGACTTGCTTCTATGCCAAGTTCGAGTGATGGTAAGGATTCAGACTGTTTAGAATACGACAAACCAATGAGAAACACCATCCTATCTTACGAAGAGTTCTCTGGAGATCGGAATTTCTTAAAAATTAAAGCAGAGTCAAAGGCTGTTCTTGGTTCTCTGTTAGCCAAGTTGCAGACACAGGTTGACTTGATTACAACAAAGCATGAAGTTGGCAAGACCAAGGATTTGGCAGAGTTTCTAATCAAGGCAGAAAGAGAAGATTCCCCGCTTTCCAATGATAGTTCAATATTTGTTCATGTCATTAATTCATGTATTTCACTCGGATGGTTGGATCAAGCACATGACCTTCATGATGAGATGCGGATAGCTGGAATTAAAACTGGCTCATCTGTGTATGCCTCTCTCTTGAAAGCCTATTGTCAAGCAAATAAGGCTGCAGAAGTCACTTCACTTTTAAGAGATGCAAGGAAGGATGGTATCCAGCTGGACTCTAGTTCTTATGAGGCGATGATCCAATCCAGGGTGCTTCATGAGGATACAAAGGGAGCACTCCGTTTATTCAAAGAGATGAAAGTGGCTAAAATTCCAAAAGTTGGACAGCAAGACTCTATCATGCAAGCTAAAAGTCATGTACAGAAAGATGAATCTGGTTTGATGACGAATCTGTTGCAGGAAATCAAAGAAGGGCAGAAAGTGAATTATGGGGTTCATGACTGGAATAATGTAATCCATTTTTTCTGTAAGAAGAGACTAATGAAAGATGCTGAAAAGGCTCTAAAGAAGATGAGGAGCCTAGGCCACACGCCAAATGCACAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTATTGGAGGGAACTATCTGGAGGTAACAGAAAGCTCTTGGTCTGAGATGAAAGCTCTTGCTTCTTCAGTCTCAATGAAGTTTGATCAGGAGCTTCTTCATTCAGTGCTGTACACATTTGTGAGGGGTGGATTCTTCAGTCGAGCCAATGAAGTTGTGCCAATGATGGAAAAAGCTAACATGTTTATTGACAAGTACAAGTATCGAATGCTTTTCCTGAAGTATCATAAAACATTATATAAAGGCAAGGCTCCGAAGTTTTAG 2052 0.4118 MIRNPHHHSKITASPLMSCRSMLVRAIAAPVIFSCSNFSSTFSGYLEGRPDMGWKAAAKLIRHWKILRGDNVMIIRGKDRGKIGIIKRTIHSGNRVIVGAKNQMAFIVNKLLTTFVESLDVQWLEKAYGLVEKAVEEGKQKLLEKEVLMYLYCGLAKAGLPVPASTVLRKMINSEQFPSVSAWSAVLAHMSQTADGSYLAAELILEISYLFQKNRVDPRRKSNSPLVAMKPDTTAFNIALAACLLFETTRKAEQLLDAMPRIGVKADANLLIIMAHSTSNVVLEMLRKSKEAKNSLAATKFTSHATEVSHKYSPGLASMPSSSDGKDSDCLEYDKPMRNTILSYEEFSGDRNFLKIKAESKAVLGSLLAKLQTQVDLITTKHEVGKTKDLAEFLIKAEREDSPLSNDSSIFVHVINSCISLGWLDQAHDLHDEMRIAGIKTGSSVYASLLKAYCQANKAAEVTSLLRDARKDGIQLDSSSYEAMIQSRVLHEDTKGALRLFKEMKVAKIPKVGQQDSIMQAKSHVQKDESGLMTNLLQEIKEGQKVNYGVHDWNNVIHFFCKKRLMKDAEKALKKMRSLGHTPNAQTFHSMVTGYAAIGGNYLEVTESSWSEMKALASSVSMKFDQELLHSVLYTFVRGGFFSRANEVVPMMEKANMFIDKYKYRMLFLKYHKTLYKGKAPKF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1321 683 Pfam KOW motif 68 98 IPR005824 -
Lele06g1321 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Lele06g1321 683 PANTHER BNAC05G43320D PROTEIN 277 683 - -
Lele06g1321 683 ProSitePatterns Ribosomal protein L24 signature. 69 86 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lele06g1321 683 Pfam PPR repeat 412 439 IPR002885 -
Lele06g1321 683 TIGRFAM PPR: pentatricopeptide repeat domain 553 585 IPR002885 -
Lele06g1321 683 SUPERFAMILY Translation proteins SH3-like domain 61 111 IPR008991 -
Lele06g1321 683 Gene3D Tetratricopeptide repeat domain 517 679 IPR011990 GO:0005515
Lele06g1321 683 SMART kow_9 65 92 IPR005824 -
Lele06g1321 683 Gene3D - 55 111 IPR014722 -
Lele06g1321 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Lele06g1321 683 CDD KOW_RPL26 69 98 IPR041988 GO:0003723
Lele06g1321 683 Pfam PPR repeat family 551 596 IPR002885 -
Lele06g1321 683 Pfam Pentatricopeptide repeat domain 464 509 IPR002885 -
Lele06g1321 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Lele06g1321 683 Gene3D Tetratricopeptide repeat domain 131 312 IPR011990 GO:0005515
Lele06g1321 683 Gene3D Tetratricopeptide repeat domain 382 512 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1321 Lele-ChrLele06 8463895 8467626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1321 410 667 Miscellaneous Gene Families AT4G11690 20.849 1.31e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1321 06 8463895 8467626 Lele06g1321 06 8463895 8467626 ECH
Lele06g1321 06 8463895 8467626 Lele07g1525 07 9390592 9400344 hybridization
Lele06g1321 06 8463895 8467626 Lele08g1315 08 8401956 8406640 hybridization