Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1266 ATGTCTGGGGAAGGCTTTGATGGACAGGATGCGGGCTATGTGCCCGAGAACCCCAATTTCACACAAAATCATTCTGATGAGCATGATGCAGGAGTGATTGTTAATACCGGATATCCTGAACAAGATTCTGTAGAACATGATGCAGGCAATGTCGTTGAGGAATACAATCCCCCTGACAATCATTTGGATGGACTTGATGCTGGAGATATGCCCAAAAATTCTGTATCTCCGCAACATCATATTGATGAACATCATGAGGTAGAAGATATAGCTGAGAGTTTTGATTCTCAGAAGCAGGAAGATGACTCAGATTCAAAAGGAACTGAAGTAAAACGGTGGCCAGGGTGGCCTGGAGAGAATGTATTCAGAATGCTGGTTCCTGTTCAGAAGGTTGGCAGTATTATTGGTCGCAAGGGGGAATTTATTAAGAAAATTACTGAAGAGACAAAAGCTCGTATTAAAATACTTGATGGTCCCCCTGGAACCTCAGAAAGAGCTGTAATGGTATCTGCAAAAGAAGAGCCAGATCGGACCATCCCACCTGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGCGATCCTGCAGATAGCACATCTGTTGCTGGGCGCACAATTGTTACAAGACTTCTTGTTGCTGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCTACTATAAAATCCATTCAAGATACATCTGGTTGTACCATACGAGTCCTTGGATCAGAGCACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGTGAATCTGCTGGAGTTCACAAGGCAGTTGAACTTATTGCAACTCATCTAAGAAAGTTCTTGGTAGACCGAAGCATAGTTGGAGTATTTGAAACGCAGATGCAATCGCCAGATGTTCGAGCCAACCAGAATGTGCCACCACACCAGCCATGGGGTCCTCCACCTCAAGGATTTCCAGCTCCTGCAGCTGGTGGACCTCCATTTGCTCCTAACCCTCAATATATGCCACCTTCACATCACTATGATAACTATTACCCACCAGCTGATCTGCCTCCTATCGACAAGCACCTTCATCAGGGACCACCTGCTTATGGAAGGGATGCTTCTATGGTTTCCAGTGCGCAACCACAACAATCTGTTGTGACTAAGGTTACACAGCATATGCAAATTCCTCTGTCCTATGCAGATGCAGTTATTGGAACATCAGGTGCAAACATCAGCTACATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAAGAGACAAGGGGTGTTCCAGGGGAGATGACTGTTGAAATAAGTGGGACTGCTTCTCAAATACAGACTGCCCAACAACTGGTGCAGAACTTCATGGCTGAAGCTGCTAGCTCGGCACAGGATCAAATGGGGGGATCAGTTGCGCAAGGCTACAATTCGTATCCTGCAAATGCTCCTGTTTACGCATCTCCACCTTCAAGCGCAGGTGGCCATACAGGGCACGCACCTGCTGCTGATTATGGTCCTGTATACGGCACCAATTATGGCTATTGA 1548 0.4593 MSGEGFDGQDAGYVPENPNFTQNHSDEHDAGVIVNTGYPEQDSVEHDAGNVVEEYNPPDNHLDGLDAGDMPKNSVSPQHHIDEHHEVEDIAESFDSQKQEDDSDSKGTEVKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPDRTIPPAVDGLLRVHKQIVNVDRDPADSTSVAGRTIVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELIATHLRKFLVDRSIVGVFETQMQSPDVRANQNVPPHQPWGPPPQGFPAPAAGGPPFAPNPQYMPPSHHYDNYYPPADLPPIDKHLHQGPPAYGRDASMVSSAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASSAQDQMGGSVAQGYNSYPANAPVYASPPSSAGGHTGHAPAADYGPVYGTNYGY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1266 515 MobiDBLite consensus disorder prediction 1 77 - -
Lele08g1266 515 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 111 477 - -
Lele08g1266 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 293 IPR036612 GO:0003723
Lele08g1266 515 SMART kh_6 209 284 IPR004087 GO:0003676
Lele08g1266 515 SMART kh_6 388 458 IPR004087 GO:0003676
Lele08g1266 515 SMART kh_6 118 198 IPR004087 GO:0003676
Lele08g1266 515 MobiDBLite consensus disorder prediction 93 114 - -
Lele08g1266 515 CDD KH-I 391 454 - -
Lele08g1266 515 Gene3D - 119 289 - -
Lele08g1266 515 MobiDBLite consensus disorder prediction 313 340 - -
Lele08g1266 515 Pfam KH domain 391 454 IPR004088 GO:0003723
Lele08g1266 515 Pfam KH domain 213 280 IPR004088 GO:0003723
Lele08g1266 515 Pfam KH domain 122 174 IPR004088 GO:0003723
Lele08g1266 515 CDD PCBP_like_KH 121 190 - -
Lele08g1266 515 ProSiteProfiles Type-1 KH domain profile. 210 279 - -
Lele08g1266 515 ProSiteProfiles Type-1 KH domain profile. 119 186 - -
Lele08g1266 515 MobiDBLite consensus disorder prediction 304 340 - -
Lele08g1266 515 CDD PCBP_like_KH 212 280 - -
Lele08g1266 515 Gene3D K Homology domain, type 1 377 465 IPR036612 GO:0003723
Lele08g1266 515 MobiDBLite consensus disorder prediction 93 109 - -
Lele08g1266 515 ProSiteProfiles Type-1 KH domain profile. 389 453 - -
Lele08g1266 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 173 IPR036612 GO:0003723
Lele08g1266 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 379 460 IPR036612 GO:0003723
Lele08g1266 515 MobiDBLite consensus disorder prediction 15 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1266 Lele-ChrLele08 8059917 8065161 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1413 05 8933915 8941455 Lele08g1266 08 8059917 8065161 hybridization
Lele06g1272 06 8109332 8119677 Lele08g1266 08 8059917 8065161 hybridization