Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1413 ATGTATCCTATGCAGCGGATAGCCTCCATATCCAAACGCCATTTAACCCTCCGCTCACCGACGTCGAACCCCGCATTTATAGTTGGAATGTCTGGGGAAGGCTTTGATGAACAGGATGCGGGCTATGTGCCCGAGAACCCCAATTTCCCACAAAATCATTCTGATGAGCAAGATTCAGGAGTGATTGATAATACCGGATATCCTGAACAAGAGTCTGTAGAACATGATGCAGGCAATGTCGTGGAGGAATACAATCCTCCAGACAATCATTTGGATGAACTTGATGCGGGAGATATGCCCAAAAATTCTGAATCTCCGCAACAGCATATTGATGAACATCATGAGGTAGGAGATATAACTGAGAGTTTTGATTCTCAGAAGCAGGAACATGACTTAGATTCAAAAGGAACTGAAGTAAAACGGTGGCCAGGGTGGCCTGGAGAGAATGTATTCAGAATGTTGGTTCCTGTTCAGAAGGTTGGCAGTATCATTGGTCGCAAGGGTGAATTTATTAAGAAAATTACTGAAGAGACAAAAGCTCGTATTAAAATACTTGATGGTCCACCTGGAACCTCAGAAAGAGCTGTAATGATATCTGCAAAAGAAGAGCCAGATCGGATCATCCCACCCGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGCGATCCTGCTGATAGCACATCTGTTGCTGGGCGCACAGTTGTTACAAGACTTCTTGTTGCCGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCTACTATAAAATCCATTCAAGATACATCTGGTTGTACCATACGAGTCCTTGGATCAGAGAACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTCGTTGAAATACAAGGTGAATCTGCGGGAGTACACAAGGCAGTTGAACTTATTGCAACTCATCTAAGAAAGTTCTTGGTAGACCGAAGCATAGTTGGAGTATTTGAAACGCAGATGCAATCGCCAGATGTTCGAGCCAACCAGACTGTGCCACCACACCAGCCATGGGGTCCCCCACCTCAAGGATTTCCAGCTGCTGCAGCTGGTGGACCTCCATTTGCTCCTAACCCTCAATATATGCCACCTTCACATCACTACGATAACTATTACCCGCCTGCTGATCTGCCTCCCATGGACAAGCACCTTCATCAGGGACCACCTGCTTATGGAAGGGATGCTTCTATGGTGTCCAGTGCGCAACCACAACAATCTGTTGGGACTAAGGTTACACAGCATATGCAAATTCCTCTGTCCTATGCAGATGCAGTTATTGGAACATCAGGTGCAAACATCAGCTACATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAAGAGACAAGGGGTGTTCCAGGGGAGATGACTGTTGAAATAAGTGGGACTGCTTCACAAATACAGACTGCTCAACAACTGGTGCAGAACTTCATGGCTGAAGCTGCAAGCACGGCACAGGATCAAATGGGGGGATCAGTTGCGCAAGGCTACAATTCGTATCCAGCAAATGCTCCTGTTTATGCATCTCCACCCTCAAGCGCTGGTGGCCATACAGGGCACGCGCCTGGAGCTGATTATGGTCCTGTATACGGCACCAATTATGGCTATTGA 1635 0.4661 MYPMQRIASISKRHLTLRSPTSNPAFIVGMSGEGFDEQDAGYVPENPNFPQNHSDEQDSGVIDNTGYPEQESVEHDAGNVVEEYNPPDNHLDELDAGDMPKNSESPQQHIDEHHEVGDITESFDSQKQEHDLDSKGTEVKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMISAKEEPDRIIPPAVDGLLRVHKQIVNVDRDPADSTSVAGRTVVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSENLPVFALRDDSVVEIQGESAGVHKAVELIATHLRKFLVDRSIVGVFETQMQSPDVRANQTVPPHQPWGPPPQGFPAAAAGGPPFAPNPQYMPPSHHYDNYYPPADLPPMDKHLHQGPPAYGRDASMVSSAQPQQSVGTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASTAQDQMGGSVAQGYNSYPANAPVYASPPSSAGGHTGHAPGADYGPVYGTNYGY 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1413 544 ProSiteProfiles Type-1 KH domain profile. 148 215 - -
Lele05g1413 544 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 489 IPR036612 GO:0003723
Lele05g1413 544 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 202 IPR036612 GO:0003723
Lele05g1413 544 MobiDBLite consensus disorder prediction 45 66 - -
Lele05g1413 544 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 140 507 - -
Lele05g1413 544 Gene3D - 148 318 - -
Lele05g1413 544 MobiDBLite consensus disorder prediction 86 108 - -
Lele05g1413 544 CDD PCBP_like_KH 241 309 - -
Lele05g1413 544 ProSiteProfiles Type-1 KH domain profile. 418 482 - -
Lele05g1413 544 MobiDBLite consensus disorder prediction 36 108 - -
Lele05g1413 544 CDD PCBP_like_KH 150 219 - -
Lele05g1413 544 Gene3D K Homology domain, type 1 406 495 IPR036612 GO:0003723
Lele05g1413 544 ProSiteProfiles Type-1 KH domain profile. 239 308 - -
Lele05g1413 544 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 238 322 IPR036612 GO:0003723
Lele05g1413 544 Pfam KH domain 242 309 IPR004088 GO:0003723
Lele05g1413 544 Pfam KH domain 151 203 IPR004088 GO:0003723
Lele05g1413 544 Pfam KH domain 420 483 IPR004088 GO:0003723
Lele05g1413 544 CDD KH-I 420 483 - -
Lele05g1413 544 SMART kh_6 147 227 IPR004087 GO:0003676
Lele05g1413 544 SMART kh_6 238 313 IPR004087 GO:0003676
Lele05g1413 544 SMART kh_6 417 487 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1413 Lele-ChrLele05 8933915 8941455 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1413 05 8933915 8941455 Lele07g1474 07 8994097 8998851 hybridization
Lele05g1413 05 8933915 8941455 Lele08g1266 08 8059917 8065161 hybridization