Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1272 ATGGCTGTGCCAGCCATCGCAGAATACATTTCCTCTTGCTTGTGGGCAATGGAACTTGCTAGGGTTAGGCAGGTAGATCTTATAGCGGAGAATTTGGATTGGACCGCTCCTCCTCCATATGGGGGAAAGCTGATAGCCTCCATATCCAAACGCCATTTAACCCTACGCGCACCGACGCCGGACCCCGCAATTATAGTTGGAATGTCTGGGGAAGGCTTTGATGGACAGGATGCGGGCTATGTGCCCGAGAACCCCAATTTCCCACAAAACCATTCTGATGAGCATGATGCAGGAGTGATTGTTAATACCGGATATCCTGAAGAAGAGTCTGTAGAACATGATGCAGGCAACGTCGTTGAGGAATACAATCCTCCAGACAATCATTTGGATGGACTTGATGCTGGAGATATGCCCAAAAATTCTGTGTCTCCGCAACATCATATTGATGAACATCATGAGGTAGAAGATATAGCCGAGAGTTTTGATTCTCAGAAGCAGGAAGATGACTCAGATTCAAAAGGAACTGAAATAAAACGGTGGCCAGGGTGGCCTGGAGAGAATGTATTCAGAATGCTGGTTCCTGTTCAGAAGGTTGGCAGTATTATTGGTCGCAAGGGGGAATTTATTAAGAAAATTACTGAAGAGACAAAAGCTCGTATTAAAATACTTGATGGTCCCCCTGGAACCTCAGAAAGAGCTGTGATGGTATCTGCAAAAGAAGAGCCAGAGCGGACCATCCCACCTGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGTGATCTTGCAGATAGTACATCTGTTGCTGGGCGCACAGTTGTTACAAGACTTCTTGTTGCTGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCTACTATAAAATCCATTCAAGATACATCTGGTTGTACCATACGAGTCCTTGGATCAGAGCACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTCGAAATACAAGGTGAATCTGCTGGAGTTCACAAGGCAGTTGAACTTATTGCAACTCATCTAAGAAAGTTCTTGGTAGACCGAAGCATAGTTGGAGTATTTGAAACGCAGATGCAATCGCCAGATGTTCGACCCAACCAGAATGTGCCACCACACCAGCCATGGGGTCCTCCACCTCAAGGATTTCCAGCTCCTGCAGCTGGTGGACCTCCATTTGCTCCTAACCCTCAATATATGCCACCTTCACATCACTATGATAACTATTACCCACCAGCTGATCTGCCTCCTATCGACAAGCACCTTCATCAGGGACCACCTGCTTATGGAAGGGATGCTTCTATGGTTTCCAGTGCGCAACCACAACAATCTGTTGTGACTAAGGTTACACAGCATATGCAAATTCCTCTGTCCTATGCAGATGCAGTTATTGGAACATCAGGTGCAAACATCAGCTACATTCGTCGTGCTAGTGGAGCTAGTATTACAATTCAAGAGACAAGGGGTGTTCCAGGGGAGATGACTGTTGAAATAAGTGGGACTGCTTCTCAAATACAGACTGCTCAACAACTGGTGCAGAACTTCATGGCTGAAGCTGCTAGCTCGGCACAGGATCAAATGGGGGGATCAGTTGCGCAAGGCTACAATTCGTATCCTGCAAATGCTCCTGTTTATGCATCGCCACCCTCAAGCGCAGGTGGCCATACAGGGCACGCAACTGCTGCTGATTATGGTCCTGTATACGGCACCAATTATGGCTATTGA 1749 0.4683 MAVPAIAEYISSCLWAMELARVRQVDLIAENLDWTAPPPYGGKLIASISKRHLTLRAPTPDPAIIVGMSGEGFDGQDAGYVPENPNFPQNHSDEHDAGVIVNTGYPEEESVEHDAGNVVEEYNPPDNHLDGLDAGDMPKNSVSPQHHIDEHHEVEDIAESFDSQKQEDDSDSKGTEIKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPERTIPPAVDGLLRVHKQIVNVDRDLADSTSVAGRTVVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELIATHLRKFLVDRSIVGVFETQMQSPDVRPNQNVPPHQPWGPPPQGFPAPAAGGPPFAPNPQYMPPSHHYDNYYPPADLPPIDKHLHQGPPAYGRDASMVSSAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASSAQDQMGGSVAQGYNSYPANAPVYASPPSSAGGHTGHATAADYGPVYGTNYGY 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1272 582 MobiDBLite consensus disorder prediction 160 176 - -
Lele06g1272 582 Gene3D K Homology domain, type 1 444 532 IPR036612 GO:0003723
Lele06g1272 582 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 181 241 IPR036612 GO:0003723
Lele06g1272 582 CDD PCBP_like_KH 188 257 - -
Lele06g1272 582 ProSiteProfiles Type-1 KH domain profile. 186 253 - -
Lele06g1272 582 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 276 360 IPR036612 GO:0003723
Lele06g1272 582 Pfam KH domain 280 347 IPR004088 GO:0003723
Lele06g1272 582 Pfam KH domain 189 241 IPR004088 GO:0003723
Lele06g1272 582 Pfam KH domain 458 521 IPR004088 GO:0003723
Lele06g1272 582 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 446 527 IPR036612 GO:0003723
Lele06g1272 582 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 178 542 - -
Lele06g1272 582 MobiDBLite consensus disorder prediction 369 404 - -
Lele06g1272 582 CDD KH-I 458 521 - -
Lele06g1272 582 ProSiteProfiles Type-1 KH domain profile. 456 520 - -
Lele06g1272 582 MobiDBLite consensus disorder prediction 376 404 - -
Lele06g1272 582 CDD PCBP_like_KH 279 347 - -
Lele06g1272 582 ProSiteProfiles Type-1 KH domain profile. 277 346 - -
Lele06g1272 582 SMART kh_6 185 255 IPR004087 GO:0003676
Lele06g1272 582 SMART kh_6 455 525 IPR004087 GO:0003676
Lele06g1272 582 SMART kh_6 276 351 IPR004087 GO:0003676
Lele06g1272 582 MobiDBLite consensus disorder prediction 160 180 - -
Lele06g1272 582 Gene3D - 186 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1272 Lele-ChrLele06 8109332 8119677 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1272 06 8109332 8119677 Lele07g1474 07 8994097 8998851 hybridization
Lele06g1272 06 8109332 8119677 Lele08g1266 08 8059917 8065161 hybridization