Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1231 ATGGACAAGTTGAACCTAGCTCAACTGGGTGAGAAGCTGAAGACAAGTGGATCTCAAATGGGTCGAATTGTTAGTGACAAAATGAAGGAAATTTTGCAAACCCCAACTCCTGAATCAAAGATGGTTGACGAAGCAACATCGGAGATCCTGGAGGAGCCCAACTGGGGCATGAATTTGAGGGTATGTGCAATGATCAATAGTGGAGAGTTTAATGGATCCGAGATTGTGAAGGCCATAAAGAAGAAGATTTCAAGCAAGAATTCAGTGAGCCAGAGGCTCAGTCTTGACTTGCTGGAAGCCTGTGCTATGAATTGTGAGAAAGTGTTTTCTGAGGTGGCATCAGAGAAGGTGCTTGAAGACGTGGTTAGAATGATTGATAATCCGCAAACAGATCATCAGAATAGAAGAAGGGCTTTGCAGTTGATCAGGGCTTGGGGAGAGTCAGAGGATCTTGCCTATCTGCCAGTGTTTCGTCAAACCTATATGAGTCTGAAAGGAAGAAATATGCCTCTGGAGACAGATGGAGTAAATCCACATATGCCATATTCCTTGGAGTCTCATGTACATGAAGATTCATTAGATCCTCCTGAAAGTTATCCTATTCCTGATGCTGCATTGTATGAGATGAATGGATCTGCTTTCTCTTCTAATCCCAGAACCTTATCAGTTGAAGAAAAGAAGGAGCATCTTGTCATTGCTCGAAACAGTCTTGAATTACTCTCTACCATACTAAATTCTGGAGCAGAGCCAAAACTGTTAAAGGAAGATGTTACTGTGGACTTGTTGGAAAAGTGCAGGCAGTCACTGTCTGTCATTAAGGTGATCGTGGAAAGCACCACTGATGATGAGAGGACACTTTTTGAGGCTTTGAACCTTAATGACGAGCTACAACAGGTAGTTTCCAAGTACGAGGAGTTGGAAGCTGCCAAAGATTCTGGAGCACAACCTCCCCAAGTTACAGATGCCACAAAGCATGTTGCAGAAGCCGTTCAAAATCCCATCGCACCACCTGAAAGCTTTGAAGGCGATGAATCTGGTGAGTCAGATGCTGCTGAGAGACTTCAAAGGAAGGCACCGAATAAGTCTAACGCTTCTGAGGTCAATTCTACGGCTGTTGTTGATAGTCACTGTGAGGCCAACACAATGAATTGCTCAAAAGAGAAGGATGCTGAATCAGACAGCAAGAGAAATGCTGAATGA 1200 0.4375 MDKLNLAQLGEKLKTSGSQMGRIVSDKMKEILQTPTPESKMVDEATSEILEEPNWGMNLRVCAMINSGEFNGSEIVKAIKKKISSKNSVSQRLSLDLLEACAMNCEKVFSEVASEKVLEDVVRMIDNPQTDHQNRRRALQLIRAWGESEDLAYLPVFRQTYMSLKGRNMPLETDGVNPHMPYSLESHVHEDSLDPPESYPIPDAALYEMNGSAFSSNPRTLSVEEKKEHLVIARNSLELLSTILNSGAEPKLLKEDVTVDLLEKCRQSLSVIKVIVESTTDDERTLFEALNLNDELQQVVSKYEELEAAKDSGAQPPQVTDATKHVAEAVQNPIAPPESFEGDESGESDAAERLQRKAPNKSNASEVNSTAVVDSHCEANTMNCSKEKDAESDSKRNAE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1231 399 ProSiteProfiles GAT domain profile. 221 308 IPR004152 GO:0035091|GO:0043130
Lele08g1231 399 PANTHER TOM1-LIKE PROTEIN 1 1 392 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele08g1231 399 MobiDBLite consensus disorder prediction 381 399 - -
Lele08g1231 399 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Lele08g1231 399 Gene3D - 24 181 IPR008942 -
Lele08g1231 399 SUPERFAMILY ENTH/VHS domain 34 168 IPR008942 -
Lele08g1231 399 Pfam VHS domain 39 147 IPR002014 GO:0035091|GO:0043130
Lele08g1231 399 Pfam GAT domain 234 307 IPR004152 GO:0035091|GO:0043130
Lele08g1231 399 SUPERFAMILY GAT-like domain 194 307 - -
Lele08g1231 399 CDD VHS 39 165 - -
Lele08g1231 399 Coils Coil 289 309 - -
Lele08g1231 399 MobiDBLite consensus disorder prediction 333 399 - -
Lele08g1231 399 MobiDBLite consensus disorder prediction 358 380 - -
Lele08g1231 399 Gene3D - 213 310 IPR038425 -
Lele08g1231 399 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1231 Lele-ChrLele08 7802457 7804924 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1231 08 7802457 7804924 Lele08g1231 08 7802457 7804924 ECH
Lele05g1374 05 8661039 8663620 Lele08g1231 08 7802457 7804924 hybridization
Lele06g1237 06 7855911 7858266 Lele08g1231 08 7802457 7804924 hybridization