Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1374 ATGGACAAGTTGAAACTAGCTCAACTGGGTGAGAAGCTGAAGACAAGTGGAGCTCAAATGGGTCGAATTGTTAGTGACAAAATGAAGGAAATTTTGCAAACCCCAACTCCTGAATCAAAGATGGTTGACGAAGCAACATCGGAGATCCTAGAAGAACCCTACTGGGGCATGAATTTGAGGATATGTGCAATGATAAATAGTGGAGAGTTTAATGGATCCGAGATTGTGAAGGCCATAAAGAAGAAGATTTCAAGCAAGAACCCAGTGAGCCAGAGGCTCAGTCTTGACTTGCTGGAAGCCTGTGCTATGAATTGTGAGAAAGTGTTTTCTGAGGTGGCATCAGAGAAGGTGCTTGAAGATATGGTTCGAATGATTGATAATCCGCAAACAGATCATCAGAATAGAAGAAGGGCTTTGCAGTTGATCAGGGCTTGGGGAGAGTCAGAGGATCTTGCCTATCTACCAGGGTTTCGTCAAACCTATATGAGTCTGAAAGGAAGAAATATGCCTCTGGAAACAGATGGAGTAAATCCACATATGCCATATTCCTTGGAGTCTCATGTACATGAAGATTCATTAGATCCTCCTGAAAGTTATCCTATTCCTGATGCTGCATTGCATGAGATGAATGGATCAGCTTTCTCTTCTAATCCCAGAAGCCTATCAGTTGAAGAAAAGAAGGAGCATCTTGTCATTGCTCGAAACAGTCTTGAAATACTCTCTACCATATTAAATTCTGGAGCAGAGCCAAAATTGTTAAAGTCTTTTGTTTGTAGACTTTTGAAGAGTGAAAATTATGGGAAAGAATCTACATACTTTTCAAGGCAAGAGGGTAATGTTCAAATGCAGATAGAAGATGTTACCGTGAGCTTGTTGGAAAGGTGTAGGCAGTCACTGTCTGTTATTAAGGTGATTGTGGAAAGCACCACTGATGATGAGGGAACACTTTTTGAGGCTTTGAACCTCAATGATGAGCTACAACAGGTAGTTTTCAAGTACGAGGAGTTGGAAGCTGCCCAAGATTCTGGAGCACAACCACCGTTACAGATGCCACAAAGCATGTTGCAGAAGCCGTTCAAAATCCCGTCGCACCACCTGAAAGTTTTGAAGGCGATGAATCTGGTGAGCCAGATGCTTTTGAGAGACTTCAAAGGAAGGCTCCCAGCTATTGGTTCTTTCCGTGATGTTGATCATATTGCTAGAATATGGAATTGGCCGGAGTTTCTCCCTGAACGCCTGTGA 1242 0.4259 MDKLKLAQLGEKLKTSGAQMGRIVSDKMKEILQTPTPESKMVDEATSEILEEPYWGMNLRICAMINSGEFNGSEIVKAIKKKISSKNPVSQRLSLDLLEACAMNCEKVFSEVASEKVLEDMVRMIDNPQTDHQNRRRALQLIRAWGESEDLAYLPGFRQTYMSLKGRNMPLETDGVNPHMPYSLESHVHEDSLDPPESYPIPDAALHEMNGSAFSSNPRSLSVEEKKEHLVIARNSLEILSTILNSGAEPKLLKSFVCRLLKSENYGKESTYFSRQEGNVQMQIEDVTVSLLERCRQSLSVIKVIVESTTDDEGTLFEALNLNDELQQVVFKYEELEAAQDSGAQPPLQMPQSMLQKPFKIPSHHLKVLKAMNLVSQMLLRDFKGRLPAIGSFRDVDHIARIWNWPEFLPERL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1374 413 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Lele05g1374 413 CDD VHS 39 165 - -
Lele05g1374 413 Pfam VHS domain 39 147 IPR002014 GO:0035091|GO:0043130
Lele05g1374 413 ProSiteProfiles GAT domain profile. 248 338 IPR004152 GO:0035091|GO:0043130
Lele05g1374 413 SUPERFAMILY ENTH/VHS domain 34 168 IPR008942 -
Lele05g1374 413 SUPERFAMILY GAT-like domain 279 337 - -
Lele05g1374 413 Gene3D - 213 340 IPR038425 -
Lele05g1374 413 PANTHER TOM1-LIKE PROTEIN 1 1 346 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele05g1374 413 Coils Coil 319 339 - -
Lele05g1374 413 Pfam GAT domain 282 337 IPR004152 GO:0035091|GO:0043130
Lele05g1374 413 Gene3D - 25 181 IPR008942 -
Lele05g1374 413 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1374 Lele-ChrLele05 8661039 8663620 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1374 05 8661039 8663620 Lele05g1374 05 8661039 8663620 ECH
Lele05g1374 05 8661039 8663620 Lele07g1437 07 8721881 8724324 hybridization
Lele05g1374 05 8661039 8663620 Lele08g1231 08 7802457 7804924 hybridization