Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1226 ATGGGTTCTCTCCCTCCATTTTCAGATGCTGTTTCTCCCTCACCGTCCAAGCAATCCCTTCCTCTCATCGACGAAGCCGCCCTCCTCAGCCTTTTCAAATCTCAGCAGAGCCACATCAACTTCTTCTTCAACAATATTGACCATTCCCAAACCATCGCTTTCACGCGCACCCTCCTCAATTCCTCCGGTAAAATCTTCTTCACCGGCGTTGGCAAATCTGGATTCGTCGCTCACAAGATCTCTCAGACTCTTGTCTCCCTCGGCATCACATCTGCATTCCTATCCCCCGTCGATGCTCTCCATGGTGACATCGGAATTCTCAGCCATCGTGACGTTGTCGTCCTCCTCAGCAAATCTGGTAACACCGAGGAACTTGTTAGGCTTGTTCCTTGTGCCCGGGCCAAGGGTGCCTATCTGATATCGGTCACCTCCGTCCAAGGGAATGTGCTGGCTGGCATGTGCGATATGAACGTGCATTTGCCTTTGGAGAGGGAATTGTGTCCTTTTAATCTGGCGCCGGTGACTTCCACAGCCATCCAGATGGTTTTCGGGGATACGGTGGCGATTGCTCTTATGCAAGCCAGAAATTTGAGCAAGGAAGACTACGCCAGCAATCACCCCGCTGGAAGGATTGGCAAACACCTTATCTTCAAGGTAAAGGATGTCATGAAGAAGCAGGATGAGATTCCTGTTTGCCGGGAATCAGATCTTATTATGGATCAACTGGTGGAATTGACGAGTAAAGGATGTGGATGTCTGCTTGTTGTGGACGAGAAACATCATCTGATTGGAACATTTACAGACGGGGATCTACGACGCACGCTCAAAGCTAGTGGGGAGGGCATTTTCAAGCTCACTGTGGGGGAAATGTGCAACAGGAAACCAAAAATCATTGGTCCAGACGCTATGGCGGTGGAGGCCATGAAGAAGATGGAAGCACCTCCATCACCCGTACAATTTTTGCCTGTTATCAGTGATGGAAATGTCTTGATTGGGATTGTTACCTTGCACGGTTTGGTTTCAGCAGGGTTGTAA 1035 0.4957 MGSLPPFSDAVSPSPSKQSLPLIDEAALLSLFKSQQSHINFFFNNIDHSQTIAFTRTLLNSSGKIFFTGVGKSGFVAHKISQTLVSLGITSAFLSPVDALHGDIGILSHRDVVVLLSKSGNTEELVRLVPCARAKGAYLISVTSVQGNVLAGMCDMNVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMQARNLSKEDYASNHPAGRIGKHLIFKVKDVMKKQDEIPVCRESDLIMDQLVELTSKGCGCLLVVDEKHHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRKPKIIGPDAMAVEAMKKMEAPPSPVQFLPVISDGNVLIGIVTLHGLVSAGL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1226 344 Gene3D - 214 342 IPR046342 -
Lele08g1226 344 PANTHER - 1 344 - -
Lele08g1226 344 PIRSF KdsD_KpsF 13 344 IPR004800 GO:0005975|GO:0016853
Lele08g1226 344 Pfam SIS domain 59 189 IPR001347 GO:0097367|GO:1901135
Lele08g1226 344 ProSiteProfiles SIS domain profile. 54 197 IPR001347 GO:0097367|GO:1901135
Lele08g1226 344 ProSiteProfiles CBS domain profile. 291 344 IPR000644 -
Lele08g1226 344 CDD CBS_pair_SIS_assoc 215 340 - -
Lele08g1226 344 SUPERFAMILY SIS domain 33 343 IPR046348 GO:0097367|GO:1901135
Lele08g1226 344 Gene3D - 26 213 - -
Lele08g1226 344 ProSiteProfiles CBS domain profile. 223 285 IPR000644 -
Lele08g1226 344 CDD SIS_Kpsf 63 190 IPR035474 -
Lele08g1226 344 Pfam CBS domain 287 342 IPR000644 -
Lele08g1226 344 Pfam CBS domain 219 276 IPR000644 -
Lele08g1226 344 TIGRFAM kpsF: sugar isomerase, KpsF/GutQ family 63 334 IPR004800 GO:0005975|GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1226 Lele-ChrLele08 7748842 7750752 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1226 08 7748842 7750752 Lele08g1226 08 7748842 7750752 ECH
Lele05g1369 05 8611998 8613903 Lele08g1226 08 7748842 7750752 hybridization
Lele06g1231 06 7787259 7790057 Lele08g1226 08 7748842 7750752 hybridization