Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1231 ATGACCATCACCGACGAGACGTCTTTCACTATCGTAAGCCTAACCGCATCCACCATTGTAGAAGCTATTTTCATTCTATTCTATTCCTCTCGCTACAACATGGGTTCTCTCCCTCTATTTTCAGATGCTGTTTCTCCCTCACCGTCCAAGCAATCCCTTCCTCTCATCGACGAAGCCGCCCTCCTCAGACTTTTCAAATCTCAGCAGAACCACATCAACTTCTTCTTCAACAACATCGACCATTCCCAAACCATCGCATTCACGCGCACCCTCCTCAATTCCTCCGGTACAATCTTCTTCACCGGCGTCGGCAAATCTGGATTCGTCGCTCACAAAATCTCTCAGACTCTTGTCTCCCTCGGCATCACATCTGCATTCCTATCCCCCGTCGATGCTCTCCATGGTGACATCGGAATTCTCAGCCATCGTGACGTTGTCGTCCTCTTCAGCAAATCTGGTAACACCGAGGAACTTGTTAGGCTTGTTCCTTGCGCCCGGGCCAAGGGTGCCTATCTGATATCGGTCACCTCGGTCCAAGGGAATGCGCTGGCTGGCATGTGCGATATGAACGTGCATTTGCCTTTGGAGAGGGAATTGTGTCCTTTTAATCTGGCGCCGGTGACTTCCACAGCCATCCAGATGGTTTTCGGGGATACGGTGGCGATTGCTCTTATGCAAGCCAGAAATTTGAGCAAGGAAGACTACGCCAGCAATCACCCCGCTGGGAGGATTGGCAAACACCTTATCTTCAAGGTAAAGGATGTCATGAGGAAGCAGGATGAGATTCCTGTTTGCCGGGAATCAGATCTTATTATGGATCAACTGGTGGAATTGACGAGTAAAGGATGTGGATGTCTGCTTGTTGTGGACGAGAAACATCATCTGATTGGAACATTTACAGATGGTGATCTACGACGCACGCTCAAAGCTAGTGGGGAGGGGATTTTCAAGCTCACTGTGGGGGAAATGTGCAACAGGAAACCAAAAATCATTGGTCCAGACGCTATGGCGGTGGAGGCAATGAAGAAGATGGAAGCACCTCCATCACCCGTACAATTTTTGCCTGTTATCAGTGATGGAAATGTCTTGATTGGGATTGTTACCTTGCACGGTTTGGTTTCAGCAGGGTTGTAA 1134 0.4903 MTITDETSFTIVSLTASTIVEAIFILFYSSRYNMGSLPLFSDAVSPSPSKQSLPLIDEAALLRLFKSQQNHINFFFNNIDHSQTIAFTRTLLNSSGTIFFTGVGKSGFVAHKISQTLVSLGITSAFLSPVDALHGDIGILSHRDVVVLFSKSGNTEELVRLVPCARAKGAYLISVTSVQGNALAGMCDMNVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMQARNLSKEDYASNHPAGRIGKHLIFKVKDVMRKQDEIPVCRESDLIMDQLVELTSKGCGCLLVVDEKHHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRKPKIIGPDAMAVEAMKKMEAPPSPVQFLPVISDGNVLIGIVTLHGLVSAGL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1231 377 TIGRFAM kpsF: sugar isomerase, KpsF/GutQ family 96 367 IPR004800 GO:0005975|GO:0016853
Lele06g1231 377 Pfam SIS domain 92 222 IPR001347 GO:0097367|GO:1901135
Lele06g1231 377 Pfam CBS domain 320 375 IPR000644 -
Lele06g1231 377 Pfam CBS domain 252 309 IPR000644 -
Lele06g1231 377 Gene3D - 247 375 IPR046342 -
Lele06g1231 377 PIRSF KdsD_KpsF 46 377 IPR004800 GO:0005975|GO:0016853
Lele06g1231 377 ProSiteProfiles SIS domain profile. 87 230 IPR001347 GO:0097367|GO:1901135
Lele06g1231 377 ProSiteProfiles CBS domain profile. 324 377 IPR000644 -
Lele06g1231 377 ProSiteProfiles CBS domain profile. 256 318 IPR000644 -
Lele06g1231 377 CDD CBS_pair_SIS_assoc 248 373 - -
Lele06g1231 377 PANTHER - 34 377 - -
Lele06g1231 377 Gene3D - 59 246 - -
Lele06g1231 377 CDD SIS_Kpsf 96 223 IPR035474 -
Lele06g1231 377 SUPERFAMILY SIS domain 64 376 IPR046348 GO:0097367|GO:1901135
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1231 Lele-ChrLele06 7787259 7790057 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1231 06 7787259 7790057 Lele06g1231 06 7787259 7790057 ECH
Lele06g1231 06 7787259 7790057 Lele07g1431 07 8677744 8679655 hybridization
Lele06g1231 06 7787259 7790057 Lele08g1226 08 7748842 7750752 hybridization