Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1192 ATGATCTACACCAGAATATTAGAGAATCCAAACCAACAATTAGATCGGTATTTTAGCAGCTTTAAGGAGTTAGCTGTAAATCGGCCTTTATCAGATTTGCTTACTGCTGGGGAAGCAGCAGGAGGCGCAGTTTCAGAGGACGGTGGCCAAGCCAGTGAGGGAGAGGTTCGTCCTGATGGTGCGGAAAATCCTCCTAAACCCATAAGTGCGGGCTTAACAGAAGCGGAAGAGTTGGAGAAGTATGTCGCCATTAGAGAAGAGTTATATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATTAGAAGGCCCTACTTTCATGTACGGCCCCTCAATGTTGCTGAGCTTGAGAATTGGCATAATTATCTGGATTTTATAGAAAGGGAAGGCGACTTCAGCAAGGTTGTAAAGTTGTATGAAAGATGTGTCATCGCATGTGCCAATTATCCAGAGTACTGGATACGGTATGTATTGTGTATGGAGGCCAGTGGGAGCATGGATCTTGCAAATAATGTACTCGCTCGGGCAGCACAGGTCTTTGTGAAGAGACAACCTGAGATACATCTTTTTTCTGCACGTTTCAAGGAGCAGAATGGGGATTTACCTGGTGCCCGAGCCGCCTATCAACTGGTGCATACCGAAATTTCTCCTGGTCTTCTTGAAGCTATAATCAGGCATGCAAATATGGAAAATAGACTGGGTAACTTGGACAACGCCTACTCTTTATATGAACAGGCTATTGCCATTGAAAAAGGAAAAGAACATTTACAGACATTACCAATGTTGTTTGCTCAGTATTCTCGGTTTGTATATCTGGTTTCTGGGAATGCTGAAAAGGCTAGGGAGATTCTAGTAGAGGGGCTTGAGCATGTTCAGTCATCAAGGCCAATACTCGAAGCTTTGTTACATTTTGAGGCTATCCGACCCCTACCAAAGAAAGTTGACATTGACTTTCTAGATTCATTGGTTACAAAATTCATTGTTCCCAGCCCAGAGAACCCAAATACTGCAAGTGCATCTGATAGGGAGGAACTTTCTAGCATTTTTCTGGAGTTCTTAAATCTTTTTGGAGATGTTCAATCCATCAAAAGAGCTGAGGATCGGCATGCCAAACTCTTCTTGCCTCATAGGAGTATGTCAGAGTTGAGAAAGCGTCATGCAGAGGATTTTCTCACTTCAGATAAAGCAAAAATGTCAAGATCTTACTCTGTACCGTCACCTGCCCAATCTTCAATGGGCACATATCCAAATTCACAGAGCCAGTGGGCTTATGGAGTGCAACCGCAAACATGGCCACCGGCCACACAATCACAGGGACAACAATGGGCTGCGGGTTACACCCAGCAGGGTGCATATGGGGCTTACGCTGGATATGGGGCCACTTATGCTAATTCACAGGTGCCTGCTTCAGTTCCACAAAGTACTGCATACGCAGCCTACCCTCCTGCTTATCCTGCACAGGCTGCAGCTCCTCAACCGAGTTATGTGCAACCAGCTGCGGCTCCAGCGCTGCAACCGGCTGCTGCGGCTCCTCAGACGTATTATGGGAGTGGCTACTACTGA 1578 0.4556 MIYTRILENPNQQLDRYFSSFKELAVNRPLSDLLTAGEAAGGAVSEDGGQASEGEVRPDGAENPPKPISAGLTEAEELEKYVAIREELYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIEREGDFSKVVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARAAQVFVKRQPEIHLFSARFKEQNGDLPGARAAYQLVHTEISPGLLEAIIRHANMENRLGNLDNAYSLYEQAIAIEKGKEHLQTLPMLFAQYSRFVYLVSGNAEKAREILVEGLEHVQSSRPILEALLHFEAIRPLPKKVDIDFLDSLVTKFIVPSPENPNTASASDREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELRKRHAEDFLTSDKAKMSRSYSVPSPAQSSMGTYPNSQSQWAYGVQPQTWPPATQSQGQQWAAGYTQQGAYGAYAGYGATYANSQVPASVPQSTAYAAYPPAYPAQAAAPQPSYVQPAAAPALQPAAAAPQTYYGSGYY 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1192 525 MobiDBLite consensus disorder prediction 41 70 - -
Lele08g1192 525 Gene3D Tetratricopeptide repeat domain 115 412 IPR011990 GO:0005515
Lele08g1192 525 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 1 520 - -
Lele08g1192 525 SUPERFAMILY TPR-like 78 382 IPR011990 GO:0005515
Lele08g1192 525 SMART hat_new_1 239 277 IPR003107 GO:0006396
Lele08g1192 525 SMART hat_new_1 280 312 IPR003107 GO:0006396
Lele08g1192 525 SMART hat_new_1 135 167 IPR003107 GO:0006396
Lele08g1192 525 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 114 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1192 Lele-ChrLele08 7529608 7533692 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1337 05 8387631 8392693 Lele08g1192 08 7529608 7533692 hybridization
Lele06g1197 06 7537414 7546152 Lele08g1192 08 7529608 7533692 hybridization