Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1337 ATGCTGCTAAGAAGCTCTTCGACGCCGGTTCTTGGGTCTCTCCTCTCATCGTTCGCAGAAAGTCCCTGTAATTCCATACACTTTGAAAGCACCCACCACGTAGTGAAGCATCTATCACCATTACCAACAAGTTTTCATCACCATAGCCATAAACTCTCTTTTCACAAAACTAGGTCGTCTCACAATCTCTCCTCCTTCTCGTCCACTTCCTCTCCAATTTCACCCTCCATTGCTGACCTTGATCGCCACAGAGGCTTCAGAAGGGCCCAATCTGAAGGCAACTTAGAGGAACTCGCATATGCTTCTTCTGGCAACAAAAGTCTGTTTATGTTGGACACAATTCCATCTTTTTCCTTCAGTAACTTCAAGGGCTTAAGAGAAGAAGAGGAAGATGAAAGTGAGTTTGAGGAGGAGGAGGAGGAAGAAGAGAATAGAATTTCAAGTACCATGGAAGGTGTCAAGAATTTGATTGTGACTGAAGAGGTGAGAGTTGAGAATATTGGAACTTGCAGTGTGGGTTTGGAAAAGATGAGTGTGGAGGAAACGCTTCCTGCAGCATGGTTCGGAACTGAAGGTTGTGCGGAAGGCATGGGTGGTTGCAGAGGCGCCGGTGGCGGAGGTGTTGGAGATAGTAACTCCATGGGCTCCGGCGGCTATGATGGAGAAAGCAGGCATGAGGTGGAAGAATATTACAAGAAAATGGTGGATGAAAATCCTGGAAACCCCTTGTTCCTGAGTAAATATGCTCAGTTCTTGTATCAGTGCAAGAGAGACCATGATGGAGCAGAGGAATATTACTCGAGAGCCATACGAGCGGACCCAGAAGATGGTGAAGTTCTATCACAGTATGGAAAGTTAGTGTGGGAGCTACACCATGACCAAGACAGAGCTTCCGCTTACTTTGAACGAGCAGTTCAAGCCTCACCCCGAGACAGTCATGTGCATGCAGCGTATGCTAGTTTCCTTTGGGACACTCAAGAGGATGACAATGGCTGCTCAGCACCATACTTCCATGAGGGAGCCATGCTGGTTTCTGCAGAGGTTGTGTTCAAGGCAACCAAAGGACTAAGGACTAAAAGTTTAAAACATCAAAGGAAGTGGAAATCAGATCCTAATTATACAAAATCATGCTGCGGAGCTATGACACGTGATGTGAAATCATGCATGGAAAGACCACGGAAGGTTGGAGCAAAGTGGACAAACAAGCACATTGCCCCTGATGAGAAGATTGAAACTTTTGAGCTTGACTACGATGGCAAACGAGATAGATGGAATGGTTATGATGCATCAACATATGCGCGAGTCATTGAAAGGTGTGAAGCTAGAGACGAAGCACAAAAAAAGTACTTGAAGGAGCAACAGTTGAAGAAAGTGGAGAAAAGTGACCAAAATGGTGAGGGCATAGTTAGTGATGAGGATGAAGAGGAAGATGATCTAAAGGTCAATGAGGCTAAAGTCGATGAAAACAAACAGATGGATTTTGCAAAGGTTGAGAAGCATGTACGTACAACTGGTGGTGGAAGTACAGGAACTGTGAGGTATTTTTGCTTTTACAGTCCATTATATGATACAGGGGCCACTGAATTGGTCCTACATGGAGATAACCAATATAGAAATAGTGGACAAGCTTTGGAATTCAAGGAATTAAACATCCATGCTTGGGAAGCATTTGATAAGGGGCAGGATGTTCATATGCAGGCAGCCCCATCCCAAGCTGAGCTGCTTTACAAGAATTTCAAGATTATGAAGGAGAAATTGAATATTGAAGTCTGA 1773 0.4461 MLLRSSSTPVLGSLLSSFAESPCNSIHFESTHHVVKHLSPLPTSFHHHSHKLSFHKTRSSHNLSSFSSTSSPISPSIADLDRHRGFRRAQSEGNLEELAYASSGNKSLFMLDTIPSFSFSNFKGLREEEEDESEFEEEEEEEENRISSTMEGVKNLIVTEEVRVENIGTCSVGLEKMSVEETLPAAWFGTEGCAEGMGGCRGAGGGGVGDSNSMGSGGYDGESRHEVEEYYKKMVDENPGNPLFLSKYAQFLYQCKRDHDGAEEYYSRAIRADPEDGEVLSQYGKLVWELHHDQDRASAYFERAVQASPRDSHVHAAYASFLWDTQEDDNGCSAPYFHEGAMLVSAEVVFKATKGLRTKSLKHQRKWKSDPNYTKSCCGAMTRDVKSCMERPRKVGAKWTNKHIAPDEKIETFELDYDGKRDRWNGYDASTYARVIERCEARDEAQKKYLKEQQLKKVEKSDQNGEGIVSDEDEEEDDLKVNEAKVDENKQMDFAKVEKHVRTTGGGSTGTVRYFCFYSPLYDTGATELVLHGDNQYRNSGQALEFKELNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKIMKEKLNIEV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1337 590 SMART hat_new_1 222 254 IPR003107 GO:0006396
Lele05g1337 590 SMART hat_new_1 257 289 IPR003107 GO:0006396
Lele05g1337 590 SMART hat_new_1 292 324 IPR003107 GO:0006396
Lele05g1337 590 SUPERFAMILY TPR-like 226 329 IPR011990 GO:0005515
Lele05g1337 590 Coils Coil 125 146 - -
Lele05g1337 590 Pfam Pre-mRNA splicing Prp18-interacting factor 528 587 IPR021715 -
Lele05g1337 590 Pfam Pre-mRNA splicing Prp18-interacting factor 415 503 IPR021715 -
Lele05g1337 590 MobiDBLite consensus disorder prediction 124 148 - -
Lele05g1337 590 MobiDBLite consensus disorder prediction 129 145 - -
Lele05g1337 590 PANTHER STEP II SPLICING FACTOR SLU7 520 588 IPR039974 GO:0000398|GO:0030628
Lele05g1337 590 Gene3D Tetratricopeptide repeat domain 221 366 IPR011990 GO:0005515
Lele05g1337 590 MobiDBLite consensus disorder prediction 455 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1337 Lele-ChrLele05 8387631 8392693 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1337 05 8387631 8392693 Lele07g1391 07 8460947 8464416 hybridization
Lele05g1337 05 8387631 8392693 Lele08g1192 08 7529608 7533692 hybridization