Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1197 ATGGGTGATAGTGAAGCAGTTACTGAAAAATCTGCAGCTGTAAGCTTCAATTCTGCGAGCTATACTTCAAGTGGCCAAGTTGATGCCATACCAGATCCTATTCCCGAGGCGGTTTCTACTGTTGCTGCATCTAGTGTAGGAGCTCAGCAGGCTAGTGCAACAATTGAATCGAATTGTTCTAATTTTGGAGACGGGAATGCTTATAATGGGGATCCTAATTCTGTTCTACAACAGGCCCAGTTCAACACGACCGATGGAGGAACCATGCAAACTGATGCTGATCAGACTGCCATTGGGAACGCAGCCACAGAATATCATCAAGTGCCTGACTATAATTCATCTGTAAATGGGGCAGTGGCAAATGCCACAGGACTCGAGAATGGGAACATGTTGGAGAATTTTGATGGATCAGCAGCTGATGAGAAACAGCTTGAAGATGCTGCAATGTCTGCTGAGGAAGATAGGCTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTTAATGCTTGGACTTCCCTGATCGAGGAAACAGAGAAAGTGGCAGAGGATGAAGAGATCTTGAAGGGAATACTCATTAAAGAACATTATTCTGATGCTTTGTGGCTTGTTTGTTATGATTTTTTATGCCGTTTGAACAACATTCTGAAGATCCAAAAAGTTTATGATGGTTTTCTAGCCGAATTTCCTTTGTGCTATGGATATTGGAAGAAGTATGCTGATCACGAGGCTCGTCTGAGCTCTATTGATAAAGTTGTTGAAGTTTATGAGCGAGCTGTTCAAGGAGTTACATATTCGGTGGATATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGAGCCAGATACAGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCATTATGGGATAAATACATCGAATACGAATACATGCAGCAAGATTGGGCTCGTCTTTCCATGCTCTACACCAGAATATTAGAGAATCCAAGCCAACAATTAGATCGGTATTTTAGCAGCTTTAAGGAGTTAGCTGGAAATAGGCCTTTATCAGAATTGCGTACAGCTGAGGAAGCAGCAGGAGGCACAGTTTCAGAGGACGTTGGCCAAGCCAATGAGGGAGAGGTTCGTCCTGATGGTGCGGAAAATCCTCCTAAACCTGTAAGTGCGGACTTAACAGAAGCGGAAGAGTTGGAGAAGTATGTCGCCATTAGAGAAGAGTTATACAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATTAGGAGGCCCTACTTTCATGTACGGCCCCTCAATGTTGCAGAGCTTGAGAATTGGCACAATTATCTGGATTTTATAGAAAGGGAAGGCGACTTCAGCAAGGTTGTAAAGTTGTATGAAAGATGTGTCATCGCATGTGCCAATTATCCAGAGTACTGGATACGGTATGTATTGTGTATGGAGGCCAGTGGGAGCATGGATCTTGCAAATAATGTACTCGCTCGGGCAACACAGAGACAACCTGAGATACATCTTTTTTCTGCACGTTTCAAGGAGCAGAATGGGGATTTACCTGGTGCCCGAGCAGCCTATCAACTGGTGCATACCGAAATTTCTCCTGGTCTTCTTGAAGCTATAATCAGGCATGCAAATATGGAAAATAGACTGGGTAACTTGGACGACGCCTACTCTTTATATGAACAGGCTATTGCCATTGAAAAAGGAAAAGAACATTCACAGACATTACCAATGCTGTTTGCTCAGTATTCTCGGTTTGTATATCTGGTTTCTCGGAATGCTGAAAAGGCTAGGGAGATTCTAGTCGAAGGGCTTGAGCATGTTCAGTCATCAAGGCCAATACTCGAAGCTTTGTTACATTTTGAGGCTATCCGTCCCCTACCAAAGAAAGTTGACATTGACTTTCTAGATTCATTGGTTACAAAATTCATTGTTCCCAGCCCAGAGAACCCAAATACTGCAAGTTCATCTGATAGGGAGGAACTTTCTAGCATTTTTCTGGAGGTAAGTTGTTGTAATGACGATGATTCTGAGTACTACCTGAGGAGTATTTCAGAGTTGAGAAAGCGTCATGCAGAGGATTTTCTCACTTCAGATAAAGCAAAAATGGCAAGATCTTACTCTGTCCCGTCACCTGCCCAATCTTCAATGGGCATATATCCAAATTCACAGAGCCAGTGGGCTTATGGAGTGCAACCTCAAACATGGCCACCGGCCACACAATCACAGGGACAACAATGGGCTGCTGGTTACACCCAGCAGGGAGCATATGGGGCTTACGCTGGATATGGGGCCACTTATGCTAATTCACAGGTGCCTGCGTCAGTTCCACAAAGTACTGCATACGCAGCCTACCCTCCTGCTTATCCTGCACAGCTCCACAACCGAGTTATGTGCAACCAGCTGCGGCTCCAGCGCTGCAACCGGCTGCTGCGGCTCCTCAGACATATTATGGGAGTGGCTACTACTGAGCTGATCAAGATTAGGGAGGGCCTTCTATTTTTGCTTCCTGTATTTTCTCTCCCGGGTCTTCTTCATATTGGAGACAATTTGGTCTTTAGGACAATTTGGGCATAG 2601 0.4391 MGDSEAVTEKSAAVSFNSASYTSSGQVDAIPDPIPEAVSTVAASSVGAQQASATIESNCSNFGDGNAYNGDPNSVLQQAQFNTTDGGTMQTDADQTAIGNAATEYHQVPDYNSSVNGAVANATGLENGNMLENFDGSAADEKQLEDAAMSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAEDEEILKGILIKEHYSDALWLVCYDFLCRLNNILKIQKVYDGFLAEFPLCYGYWKKYADHEARLSSIDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGEPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLSMLYTRILENPSQQLDRYFSSFKELAGNRPLSELRTAEEAAGGTVSEDVGQANEGEVRPDGAENPPKPVSADLTEAEELEKYVAIREELYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIEREGDFSKVVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQRQPEIHLFSARFKEQNGDLPGARAAYQLVHTEISPGLLEAIIRHANMENRLGNLDDAYSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLVSRNAEKAREILVEGLEHVQSSRPILEALLHFEAIRPLPKKVDIDFLDSLVTKFIVPSPENPNTASSSDREELSSIFLEVSCCNDDDSEYYLRSISELRKRHAEDFLTSDKAKMARSYSVPSPAQSSMGIYPNSQSQWAYGVQPQTWPPATQSQGQQWAAGYTQQGAYGAYAGYGATYANSQVPASVPQSTAYAAYPPAYPAQLHNRVMCNQLRLQRCNRLLRLLRHIMGVATTELIKIREGLLFLLPVFSLPGLLHIGDNLVFRTIWA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1197 866 SUPERFAMILY TPR-like 209 656 IPR011990 GO:0005515
Lele06g1197 866 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 139 798 - -
Lele06g1197 866 Gene3D Tetratricopeptide repeat domain 439 727 IPR011990 GO:0005515
Lele06g1197 866 FunFam Putative pre-mrna-processing factor 39 158 357 - -
Lele06g1197 866 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 438 714 - -
Lele06g1197 866 SMART hat_new_1 459 491 IPR003107 GO:0006396
Lele06g1197 866 SMART hat_new_1 246 278 IPR003107 GO:0006396
Lele06g1197 866 SMART hat_new_1 212 244 IPR003107 GO:0006396
Lele06g1197 866 SMART hat_new_1 281 316 IPR003107 GO:0006396
Lele06g1197 866 MobiDBLite consensus disorder prediction 361 392 - -
Lele06g1197 866 Gene3D Tetratricopeptide repeat domain 158 353 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1197 Lele-ChrLele06 7537414 7546152 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1197 06 7537414 7546152 Lele07g1391 07 8460947 8464416 hybridization
Lele06g1197 06 7537414 7546152 Lele08g1192 08 7529608 7533692 hybridization