Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1178 ATGGACGCTGGATTTGTTGGACTTGTTGTGTTCCGAGATGTCTTCCTTATTGGTGGTGCAGTATATTTAAGAGGGAGCATCTTGGGTTGGAAGGTTAATACAATGTTGCAGTTAGCTTTAGTTGCTGCAACTCTTCTTCAACCAGAGTTTGGAACCCAAGAAACTCAATCGTACATTACTTATCTGAGTTGGTTAGTAGCTCCAACCACAGTAAGGTCAACGGCAGCATATGGAGCACAATACGCACGCATATTAGCTCTTATATCAAAGTTTCTCTGTTTGGCTCTTCCAAACACTTGCTCTGTTTCTTCCATGAACTCTGCCTCTTTCTTCTGTTTTGCATGCTCCTCCATCTCACCTCACTGGAACTCTTCTTTTTTTCATGGGCATCTCCCGTTTCGGCTCTTTCCCACGTGGCATAGAGCTGTTCTCACATTTTTGCTGCTGATAGCTCGTGATCGTTTACTTTTATCGTCTAGGGTTTATTTTGGGGATTTTCTTGATTCGTTGAAGAATAATTTGGATATTCTGGGTTTAGGGGATTTTGTTTTCTCTTCCGCATTTCCAATATCAGGGTCGTTTCAATATTCGGTGTTAGGTTTATTGTCTGTTGTATATCATCTGTTCGATCCCCTCGCTATTTCTTATGATTGGTTGGCTCTTTCGAGAGTTTGGGAAGTCCAAAGTTTCATTAAGGCTGCATCATGCTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGAGGAATTTCAGTTGCTAGAATCACAAATACTTAATGGGGATTGGGATGGTTGCGTCAGCACTCTTAATTTAATAAAGGATATGATTGATGAAACTAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATTCTTTAGCTTTGAATGTATTAAGGAGACAGGTCGCTGCATTACAGGTGGACAAATGCAAGGTTCACAGCCTGGCCAATAGCATGCTTTCCTTGAAGGATACGGAGTTAGGTTTAATAGATGATACCGTTGTCCATGATTTGCGAAGAAAGTTGTCAACTGACTTGGAGAAATTTCTCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTATTAGAAACTACTCTTACTTCCTGGATTGATTCTTGTATATATCATAGTTCATCAAGTCCAATTTCACTTTGTGGGGACCATTGTTGTAGTCGAGATCTCATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTCGTGCAGTTTTCTAATAATGGGGAGTACCTTGCCTCTTCATCTAATGATTGTACAGCCATCATATGGAAGGTGATGGAAGATGGGAAATTGACACTGAAACACACACTACAAGGTCACCAAAATCCTGTATCTTTTGTGGCATGGAGTCCTGATGACACTAAGTTGCTCGCATGCGGGATGTTGAGACAGGGCATCTGCATGTGGGATTGTGATGGAAACGAGCTAAAAGCTTGGAGAGGAGTTAGGATGCCCAAAGTTGTAGATCTTGCTGTTACATCAGATGGGGAGCACCTTATCACCATATTCATGGAAAAAGAGATTCGTATTTTGCATATGGGAACGAATACAGAGCGAGTCATCTCAGAGGAGCGCCCGATCACATCCCTTTCAGTTTCAGGAGATGGCAAGTTCTTCATTGTCAATCTAAACAGCCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGACAAGGCATTGAGGTACCAGGGCCATAAGCAACACAAATACGTGATAAGTTCATGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGTTAGTGAGAATTCACAGGTCTACATTTGGAACCGCAGGAACTCAAAGCCAATAGAGGTTTTATCTGGGCACACAATGACTGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCTGCAAGTGATGATTATACAATTCGTCTGTTTCGCTTTGAAATCAACCACGGAGGCTGA 2019 0.4205 MDAGFVGLVVFRDVFLIGGAVYLRGSILGWKVNTMLQLALVAATLLQPEFGTQETQSYITYLSWLVAPTTVRSTAAYGAQYARILALISKFLCLALPNTCSVSSMNSASFFCFACSSISPHWNSSFFHGHLPFRLFPTWHRAVLTFLLLIARDRLLLSSRVYFGDFLDSLKNNLDILGLGDFVFSSAFPISGSFQYSVLGLLSVVYHLFDPLAISYDWLALSRVWEVQSFIKAASCLELESGISFKSEEFQLLESQILNGDWDGCVSTLNLIKDMIDETRESALFLVFRQCLLEYLSCGQDSLALNVLRRQVAALQVDKCKVHSLANSMLSLKDTELGLIDDTVVHDLRRKLSTDLEKFLPPPITVPERRLEHLLETTLTSWIDSCIYHSSSSPISLCGDHCCSRDLIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVMEDGKLTLKHTLQGHQNPVSFVAWSPDDTKLLACGMLRQGICMWDCDGNELKAWRGVRMPKVVDLAVTSDGEHLITIFMEKEIRILHMGTNTERVISEERPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKALRYQGHKQHKYVISSCFGGLNSTFIASVSENSQVYIWNRRNSKPIEVLSGHTMTVNCVSWNPRRPQMLASASDDYTIRLFRFEINHGG 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1178 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 632 672 - -
Lele08g1178 672 SUPERFAMILY WD40 repeat-like 380 664 IPR036322 GO:0005515
Lele08g1178 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 449 IPR001680 GO:0005515
Lele08g1178 672 Gene3D - 545 669 IPR015943 GO:0005515
Lele08g1178 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 494 IPR001680 GO:0005515
Lele08g1178 672 Gene3D - 378 544 IPR015943 GO:0005515
Lele08g1178 672 SMART WD40_4 454 494 IPR001680 GO:0005515
Lele08g1178 672 SMART WD40_4 409 448 IPR001680 GO:0005515
Lele08g1178 672 SMART WD40_4 538 576 IPR001680 GO:0005515
Lele08g1178 672 SMART WD40_4 580 622 IPR001680 GO:0005515
Lele08g1178 672 SMART WD40_4 496 536 IPR001680 GO:0005515
Lele08g1178 672 SMART WD40_4 625 665 IPR001680 GO:0005515
Lele08g1178 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 449 - -
Lele08g1178 672 PANTHER WD REPEAT PROTEIN 26-RELATED 230 485 - -
Lele08g1178 672 SMART ctlh 246 303 IPR006595 -
Lele08g1178 672 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 246 303 IPR006595 -
Lele08g1178 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 632 667 IPR001680 GO:0005515
Lele08g1178 672 Pfam WD domain, G-beta repeat 457 485 IPR001680 GO:0005515
Lele08g1178 672 Pfam WD domain, G-beta repeat 627 664 IPR001680 GO:0005515
Lele08g1178 672 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1178 Lele-ChrLele08 7437420 7445712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1178 1 90 Acyl Lipid Metabolism Gene Families AT4G04870 47.009 7.57e-23 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1178 08 7437420 7445712 Lele08g1178 08 7437420 7445712 ECH
Lele05g1325 05 8304140 8309404 Lele08g1178 08 7437420 7445712 hybridization
Lele06g1186 06 7442144 7450199 Lele08g1178 08 7437420 7445712 hybridization