Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1186 ATGGGGTATAGTAAGACTGCATCATGCTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGAGGAATTTCAGTTGCTAGAATCACAAATACTTAATAGGGATTGGGAGGGTTGCGTCGCCACTCTTAATTTAATAAAGGATATGATTGATGAAACTAGAGAATCCGCGCTGTTTCTTGTCTTCAGAGAGCGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATTCTTTAGCTTTGAATGTATTAAGGAGACAGGTCGCTGCATTACAGGTGGACAAATGCAAGGTTCACAGCCTGGCCAATAGCATGCTTTTCTTGAAGGATACGGAGTTAGGTTTAATAGATGATACCGTTGTCCATGATTTGCGAAGAAAGTTGTTAACTGACTTGGAGAAATTTCTCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAACTACTCTTACTTCCTGGATTGATTCTTGTATGTATCATAGTTCATCAAGTCCAATTTCACTTTGCGGGGATCATTGTTGTAGTCGAGATCTCATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTCGTGCAGTTTTCTAATAATGGGGAGTACCTTGCCTCGTCATCTAATGATTGTACAGCCATCATATGGAAGGTGATGGAAGATGGGAAATTGACATTGAAACAGACACTACAAGGTCACCAAAATCCTGTATCTTTTGTGGCATGGAGTCCTGATGACACTAAGTTGCTCACATGCGGGAATGCAGAAGTCTTGAAACTGTGGGATGTTGAAACAGGTAATTGGAAGCACACATTTGGGAGTCATGGCTTCGTTGTGAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTGTGTGGCAGCTCCGACCCAGAAAAGGGCATCTGCATGTGGGATTGCGATGGAAATGAGCTAAAAGCTTGGAGAGGAGTTAGGATGCCCAAAGTTCTAGATCTTGCTGTTACATCAGATGGGGAGCACCTTATCACCATATTCATGGAAAAAGAGATTCGGATTTTGCATATGGGAACGAATACAGAGCGAGTCATCTCAGAGGAGCACCCGATCACATCCCTTTCAGTTTCAGGAGATGGCAAGTTCTTCATTGTCAATCTTAACAGCCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGACAAGCCATTGAGGTACCAGGGCCATAAGCAACACAAATACGTGATAAGGTCATGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGGTAGTGAGAATTCACAGGTCTACATTTGGAACCGCAGGAACTCAAAGCCAATAGAGGTTTTATCTGGGCACACAATGACTGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCTGCAAGTGATGATTATACAATTCGTCATTCTGGTGTCTTTTCAACCGACATAAATAATGGTCCGTTTGATTGGGTGCAAGAACGGATGAGAGCCTTGTGGGAAATCGAACTTTCCACTTCCGGGGATTTAAACTATGAATTTCGCTTTCAGCTGTCGGGAACTCATATTTCACCGCGTCCGGTGACTCTTACCGATTTGATCCTTGCTGTTTAA 1623 0.4301 MGYSKTASCLELESGISFKSEEFQLLESQILNRDWEGCVATLNLIKDMIDETRESALFLVFRERLLEYLSCGQDSLALNVLRRQVAALQVDKCKVHSLANSMLFLKDTELGLIDDTVVHDLRRKLLTDLEKFLPPPITVPERRLEHLVETTLTSWIDSCMYHSSSSPISLCGDHCCSRDLIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVMEDGKLTLKQTLQGHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGNWKHTFGSHGFVVSSCAWFPNSKHIVCGSSDPEKGICMWDCDGNELKAWRGVRMPKVLDLAVTSDGEHLITIFMEKEIRILHMGTNTERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYQGHKQHKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSKPIEVLSGHTMTVNCVSWNPRRPQMLASASDDYTIRHSGVFSTDINNGPFDWVQERMRALWEIELSTSGDLNYEFRFQLSGTHISPRPVTLTDLILAV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1186 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 478 IPR001680 GO:0005515
Lele06g1186 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 222 - -
Lele06g1186 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 271 - -
Lele06g1186 540 CDD WD40 186 478 - -
Lele06g1186 540 Pfam WD domain, G-beta repeat 185 221 IPR001680 GO:0005515
Lele06g1186 540 Pfam WD domain, G-beta repeat 273 309 IPR001680 GO:0005515
Lele06g1186 540 Pfam WD domain, G-beta repeat 403 438 IPR001680 GO:0005515
Lele06g1186 540 Pfam WD domain, G-beta repeat 231 266 IPR001680 GO:0005515
Lele06g1186 540 Pfam WD domain, G-beta repeat 443 478 IPR001680 GO:0005515
Lele06g1186 540 FunFam WD repeat-containing protein 26 homolog 176 481 - -
Lele06g1186 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Lele06g1186 540 PANTHER WD REPEAT PROTEIN 26-RELATED 1 479 - -
Lele06g1186 540 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 19 76 IPR006595 -
Lele06g1186 540 SMART WD40_4 441 481 IPR001680 GO:0005515
Lele06g1186 540 SMART WD40_4 227 266 IPR001680 GO:0005515
Lele06g1186 540 SMART WD40_4 182 221 IPR001680 GO:0005515
Lele06g1186 540 SMART WD40_4 269 310 IPR001680 GO:0005515
Lele06g1186 540 SMART WD40_4 312 352 IPR001680 GO:0005515
Lele06g1186 540 SMART WD40_4 354 392 IPR001680 GO:0005515
Lele06g1186 540 SMART WD40_4 396 438 IPR001680 GO:0005515
Lele06g1186 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 222 IPR001680 GO:0005515
Lele06g1186 540 SUPERFAMILY WD40 repeat-like 179 478 IPR036322 GO:0005515
Lele06g1186 540 Gene3D - 181 480 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1186 Lele-ChrLele06 7442144 7450199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1186 153 345 Miscellaneous Gene Families AT5G08390 27.692 4.73e-15 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1186 06 7442144 7450199 Lele06g1186 06 7442144 7450199 ECH
Lele06g1186 06 7442144 7450199 Lele07g1375 07 8359589 8364641 hybridization
Lele06g1186 06 7442144 7450199 Lele08g1178 08 7437420 7445712 hybridization