Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1325 ATGGGCATCTCCCGTTTCGGCTCTTACCCACATGTGTTAGTTTATCTGGATTCTATTGTCATAGATTCTTCTTTCAATTTCTGTTCTGGGTTCTGCCCTTCATCCTCTTCTCAATCTCTGGCCCTTCTTCATTTTATGTTTTCTAATTCTATGCTGTTAAATTTGACTTGTTTGTTTGGGAAGTCGGAAGTCTCAGGTTTTCCTGTTAAATTGGACGTGCTGAAGCTTGCCAGCATCCTATTAATGGAGAATTCATCTGATGTGCTTGGCTCCAAAGGCTTGATTAAAAAAGTTGAATTTGTGAGGATCATCATTCAGTGCCTATACTCATTAGGGTATAGTAAGTCTGCATCATGCTTGGAATTGGAATCTGGTGTTTCATTCAAGTCTGCAGAATTTCAGTTGCTTGAATCACAAATACTTAATGGGGATTGGGATGGTTGCGTCAGCACTCTCAATTTAATAAAGGATATGATTGATGAAACAAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATTCTTTAGCTTTGAATGTATTAAGGAATCAGGTCGCTGCATTACATGTGGACAAATGCAAGGTTCACAGTCTAGCCAATAGCATGCTCTCCTTGAAGGATACGGAGTTAGGTTTAATAGATAATACCACTGTACACGATTTGCGAAGAAAGTTGTTAAATGACTTGGAGAAATTGCTCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAACTACTCTTACTTCCTGGATTGATTCTTGTATGTATCACAGTTCATCAAGTCCAATTTCACTTTGTGAGGACCATTGTTGTAGTCGAAATCTCATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAGTTCTCTAATAATGGGGAGTACCTTGCCTCTTCATCTAATGACTGTACAGCCATCATATGGAAGGTGATGGAAGATGGGAAATTGGCACTGAAACACACACTACAAGGTCACCAAAATCCTGTATCTTTTGTGGCATGGAGTCCTGATGACACTAAGTTGCTCACATGTGGGAATGCAGAAGTCTTGAAACTGTGGGATGTTGAAACAGGTACTTGCAAGCACACATTTGCGAGTCATGGCTTCGTTGTGAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTGTGTGGCAGCTCCGACCCTGAAAAGGGCATCTGCATGTGGGATTGTGATGGAAATGAGCTAAAAGCTTGGAGAGGAGTTAGGATGCCCAAAGTTCTAGATCTTGCTGTTACATCAGATGGGGAGCACCTAATCACCATATTCATGGAAAAAGAGATTAGGATTTTGCATATGGGAATGAATACAGAACGAGTCATCTCAGAGGAGCACCCGATCACATCCCTTTCGGTTTCAGGAGATGGCAAGTTCTTCATTGTCAATCTAAACAGCCAGGAGATTCATATGTGGGACGTGGATGGGAAATGGGACAAACCATTGAGGTACCAGGGCCATAAGCAATACAAATATGTGATAAGATCTTGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGGTAGTGAGAATTCACAGGTCTACATTTGGAACCGCAGGAACTCAAAGCCAATAGAGGTTTTATCTGGGCACACAATGACGGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCTGCAAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTATAA 1785 0.4174 MGISRFGSYPHVLVYLDSIVIDSSFNFCSGFCPSSSSQSLALLHFMFSNSMLLNLTCLFGKSEVSGFPVKLDVLKLASILLMENSSDVLGSKGLIKKVEFVRIIIQCLYSLGYSKSASCLELESGVSFKSAEFQLLESQILNGDWDGCVSTLNLIKDMIDETRESALFLVFRQCLLEYLSCGQDSLALNVLRNQVAALHVDKCKVHSLANSMLSLKDTELGLIDNTTVHDLRRKLLNDLEKLLPPPITVPERRLEHLVETTLTSWIDSCMYHSSSSPISLCEDHCCSRNLIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVMEDGKLALKHTLQGHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGTCKHTFASHGFVVSSCAWFPNSKHIVCGSSDPEKGICMWDCDGNELKAWRGVRMPKVLDLAVTSDGEHLITIFMEKEIRILHMGMNTERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYQGHKQYKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSKPIEVLSGHTMTVNCVSWNPRRPQMLASASDDYTIRIWGPSL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1325 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 380 - -
Lele05g1325 594 SUPERFAMILY WD40 repeat-like 289 590 IPR036322 GO:0005515
Lele05g1325 594 SMART WD40_4 464 502 IPR001680 GO:0005515
Lele05g1325 594 SMART WD40_4 422 462 IPR001680 GO:0005515
Lele05g1325 594 SMART WD40_4 379 420 IPR001680 GO:0005515
Lele05g1325 594 SMART WD40_4 551 591 IPR001680 GO:0005515
Lele05g1325 594 SMART WD40_4 337 376 IPR001680 GO:0005515
Lele05g1325 594 SMART WD40_4 506 548 IPR001680 GO:0005515
Lele05g1325 594 SMART WD40_4 292 331 IPR001680 GO:0005515
Lele05g1325 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 332 IPR001680 GO:0005515
Lele05g1325 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 594 IPR001680 GO:0005515
Lele05g1325 594 FunFam WD repeat-containing protein 26 homolog 286 591 - -
Lele05g1325 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 332 - -
Lele05g1325 594 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 129 186 IPR006595 -
Lele05g1325 594 CDD WD40 296 590 - -
Lele05g1325 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 594 - -
Lele05g1325 594 SMART ctlh 129 186 IPR006595 -
Lele05g1325 594 ProSiteProfiles LIS1 homology (LisH) motif profile. 96 128 IPR006594 GO:0005515
Lele05g1325 594 PANTHER WD REPEAT PROTEIN 26-RELATED 83 592 - -
Lele05g1325 594 Gene3D - 289 593 IPR015943 GO:0005515
Lele05g1325 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 385 IPR001680 GO:0005515
Lele05g1325 594 SMART Lish 96 128 IPR006594 GO:0005515
Lele05g1325 594 Pfam WD domain, G-beta repeat 341 376 IPR001680 GO:0005515
Lele05g1325 594 Pfam WD domain, G-beta repeat 380 419 IPR001680 GO:0005515
Lele05g1325 594 Pfam WD domain, G-beta repeat 295 331 IPR001680 GO:0005515
Lele05g1325 594 Pfam WD domain, G-beta repeat 553 590 IPR001680 GO:0005515
Lele05g1325 594 Pfam WD domain, G-beta repeat 513 548 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1325 Lele-ChrLele05 8304140 8309404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1325 263 455 Miscellaneous Gene Families AT5G08390 27.692 2.62e-15 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1325 05 8304140 8309404 Lele05g1325 05 8304140 8309404 ECH
Lele05g1325 05 8304140 8309404 Lele07g1375 07 8359589 8364641 hybridization
Lele05g1325 05 8304140 8309404 Lele08g1178 08 7437420 7445712 hybridization