Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1119 ATGCGTTCGAAGGGGTTAAGATACAAAATAGGGAGCAGACTGCAGAGCATTTCCTTCTGTCAAATACAATCTCTAGCAATAATGCCTCGTTACGATGATAAATACGGTAGTACCCGTCTATATGTGGGACGTTTGTCCTCAAGGACCCGTTCCCGTGAACTGGACAAGATCTTTGGCAGATATGGGAGGTTTCTGGGGTTTTGCCTAAACCTGGAAGGTCTATGAATTCGAGGTGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGTGATCCCCGAGATGCAGATGATGCAAGATATAACTTAGATGGGCGCGATGTGGATGGAAGTCGCATCATTGTCGAATTTGCAAAAGGGGGTCCCCGTGGTTCCCGAGAATACTTGGGTAGAGGTCCTCCTCCAGGATCTGGGCGTTGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGGGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTACCGCTGTGGGGAAAGAGGTCACATAGAACGAAACTGCAAGAATAGTCCCAAGAAACTCGGTGGTCATGGACGAAGTTATTCTCGGTCCCCTGTCAGGTCACCTTCTCCTCGTCGTGGCAGAAGCCGGGATCGAAGTTACAGCCGAGATCGCAGCTACAGCCGATCAAGATCCCCTGTCCGCAGAGAACGTAGCCCTGTTCGTGAAGATAGATCAGAGTCTCCCCGCCACAGAAGCCCAGGACCCAATCATAGTTCTCCACCTGCCAAGGCAAGGGACGATAGCCCTAATTATGATGAAGGCAATCAACAGAAGGAGAGAGGGGACATGTCTCCTGAGAATGGTGGGCTGGCCACCCAGCAAGATGTGTCTGACTATGGTGACGGTCCTAGAAGAAAGAGCAGAAGTAGAAGCCCTGTTAGTCCAAAAACTAATGGCGGTGGCCGCAGCGCTAGCCCTAGGGATGATAGGAGCCCCATTGACGATGATGACGACACCCGCCATTCTCCTAGGGGCAGTGAGTCGCCTTAA 1017 0.5074 MRSKGLRYKIGSRLQSISFCQIQSLAIMPRYDDKYGSTRLYVGRLSSRTRSRELDKIFGRYGRFLGFCLNLEGLXIRGVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLGGHGRSYSRSPVRSPSPRRGRSRDRSYSRDRSYSRSRSPVRRERSPVREDRSESPRHRSPGPNHSSPPAKARDDSPNYDEGNQQKERGDMSPENGGLATQQDVSDYGDGPRRKSRSRSPVSPKTNGGGRSASPRDDRSPIDDDDDTRHSPRGSESP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1119 338 FunFam Serine/arginine-rich splicing factor RS2Z32 30 125 - -
Lele08g1119 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 113 IPR000504 GO:0003723
Lele08g1119 338 Pfam Zinc knuckle 139 154 IPR001878 GO:0003676|GO:0008270
Lele08g1119 338 Pfam Zinc knuckle 160 177 IPR001878 GO:0003676|GO:0008270
Lele08g1119 338 SUPERFAMILY Retrovirus zinc finger-like domains 130 178 IPR036875 GO:0003676|GO:0008270
Lele08g1119 338 SMART rrm1_1 39 116 IPR000504 GO:0003723
Lele08g1119 338 Gene3D - 159 206 - -
Lele08g1119 338 Gene3D - 130 158 - -
Lele08g1119 338 MobiDBLite consensus disorder prediction 316 338 - -
Lele08g1119 338 Gene3D - 28 128 IPR012677 -
Lele08g1119 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 120 IPR000504 GO:0003723
Lele08g1119 338 ProSiteProfiles Zinc finger CCHC-type profile. 139 154 IPR001878 GO:0003676|GO:0008270
Lele08g1119 338 SUPERFAMILY RNA-binding domain, RBD 31 135 IPR035979 GO:0003676
Lele08g1119 338 MobiDBLite consensus disorder prediction 173 338 - -
Lele08g1119 338 MobiDBLite consensus disorder prediction 255 269 - -
Lele08g1119 338 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Lele08g1119 338 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Lele08g1119 338 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 233 - -
Lele08g1119 338 MobiDBLite consensus disorder prediction 199 240 - -
Lele08g1119 338 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 130 158 - -
Lele08g1119 338 ProSiteProfiles Zinc finger CCHC-type profile. 161 177 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1119 Lele-ChrLele08 7022345 7025486 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1265 05 7894593 7898134 Lele08g1119 08 7022345 7025486 hybridization
Lele06g1131 06 7019682 7027013 Lele08g1119 08 7022345 7025486 hybridization