Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1131 ATGAGTCTCTTCTCTTGCTTCTCTCCGAAACACGTGGATTTGAATTCCCCGCAGGAAGTTAATGGCGCGGCTGAATCTGAGCCGGAGACTAACACTACTAAAGTTTTGCTCAATGATATTTCCGGCGAGGCCCGTGATGGAGAGATCATGGCCGTTCTAGGTGCCAGTGGGTCCAGCAAATCGACACTCATCGACGCCCTCGCCAACAGAATATCCAAAGAGAGCTTGAAAGGAACGATCACGTTAAACGGTGAAGCTTTAGATTCCAGTCTTCTGAAAGTGATTTCAGCTTATGTCACGCAGGACGACCTTCTCTTTCCCGTGCTCACCGTGGAAGAGACCATCATGTTTTCCGCCGAGTTCAGGCCCCTCGCTGCCTCTCTAAGTCCAGAAAGAAGGCTAGAATCCAAGCTCTCATCGACCAGTTGGGTCTCCGTAACGCCCCCAATACTGTCATCGGTGACGAAGGCCACCGTGGCGTCTCCTGAGCCGGCGAATCTGCCGCGCTTCTTCTCGGAGTTCGGACACCCGATCCCCGAAACTGAGAACAGCACCGAGTTCGCCCTCGACCTCATTCGTGAGCTCGAACAAAACCCAGGTGGGACAAAGGGCTTAGTGGAATTCAATTATTGGCGATCGAATCACATGAAAAGCAAACCCAGCGGCCATGAAACTACCGTTAACGGACAAAGGGTTTCACTCAAGGACGCCATTGGTGCGAGCATTTCTCGAGACAAGTGCACAAGAATGGTTAGGGTTCTTCGCCTTCGCCATGTCCAATGCCTTCTACACCTGCGCCGAAGCCATGCCTGTCTTCCTCCAAGAGCGATACATCTTCATGAGAGAAACCGCCTACAATGCCTAGCGTCGCTCCTCCTACGTTCTGGCCCATTCAATCATCTCAATACCGTCCTTAATTTTCCTCTCCATAGCATTCGCCTCCGCAACATTCTGGGTGGTGGGTCTAGCCGGCGGAGCCTCCGGGTTCTTCTTTTACTTCTTGATTATCGTGGCGTCTTTCTGGGAAGGAAACTCTTTCGTGACGTTTCGTTTCTTTCAGGAGTGGTTTCTCACGTGATGTTGGGATTCACCGTACGTGGTGGTTGCCATTTTAGGTTACTTCGTGCTGTTCGGTGGGTTCTTCATAAGCAGAGACAGAATTCCGGCGTACTGGATATGGTTTCATTATATTTCACTGGTGAAGTACCCATACGAAGGCATGTTGCAGAACGAATTAGTCGCATCCTGGCCGTCAAAGGTTTTCGGTACTCGCCAAACACAAAAGATATCGAAAGGACAGAATCATTGCATCGGCGTTCGAAGGGGTTTAGATACGAAATAGGGAGCAGACTGCAGAGCATTTCCTTCTGTCAAATACAATCTCTAGCAATAATGCCTCGTTACGATGATAAATACGGTAGTACCCGCCTATATGTGGGACGTTTGTCCTCAAGGACGCGTTCACGTGAACTGGACAAGATCTTTGGCAGATATGGGAGAATTCGAGGTGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGTGATCCCCGAGATGCAGATGATGCAAGATATAACTTAGATGGGCGTGATGTGGATGGAAGTCGTATTATTGTCGAATTTGCAAAAGGGGGTCCCCGTGGCTCCCGAGAATACTTGGGTAGAGGTCCGCCTCCGGGATCTGGGCGTTGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGGGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTACCGCTGTGGGGAAAGAGGTCACATAGAACGAAACTGCAAGAATAGTCCCAAGAAACTCAGTGGTCGTGGACGAAGTTATTCTCGTTCGCCTGTTAGGTCACCTTCTCCTCGTCGTGGCAGAAGCCGGGATCGAAGTTACAGCCGAGATCGCAGCTACAGCCGATCAAGATCCCCTGTCCGCAGAGAACGTAGCCCTGTTCGTGAAGATAGATCAGAGTCTCCTCGCCACAGAAGCCCAGGACCCAGTCATAGTCCTCCACCTGCCAAGGCAAGGGACGATAGCCCTACTTATGATGAAGGCAATCAACAGGAGGAGAGAGGGGACATGTCTCCTGAGAATGGTGGACTGGCCATCCAGCAAGATGGGTCTGACTATAGTGACGGTCCTAGAAGAAAGAGCAGAAGTAGAAGCCCTGTTAGTCCAAAAACTAATGGCGGTGGCCGCAGTGCTAGCCCTAGGGATGATAGGAGCCCCATTGACGATGATGATGACCCCCGCCATTCTCCTAGGGCCAGTGAGTCACCTTAA 2292 0.507 MSLFSCFSPKHVDLNSPQEVNGAAESEPETNTTKVLLNDISGEARDGEIMAVLGASGSSKSTLIDALANRISKESLKGTITLNGEALDSSLLKVISAYVTQDDLLFPVLTVEETIMFSAEFRPLAASLSPERRLESKLSSTSWVSVTPPILSSVTKATVASPEPANLPRFFSEFGHPIPETENSTEFALDLIRELEQNPGGTKGLVEFNYWRSNHMKSKPSGHETTVNGQRVSLKDAIGASISRDKCTRMVRVLRLRHVQCLLHLRRSHACLPPRAIHLHERNRLQCLASLLLRSGPFNHLNTVLNFPLHSIRLRNILGGGSSRRSLRVLLLLLDYRGVFLGRKLFRDVSFLSGVVSHVMLGFTVRGGCHFRLLRAVRWVLHKQRQNSGVLDMVSLYFTGEVPIRRHVAERISRILAVKGFRYSPNTKDIERTESLHRRSKGFRYEIGSRLQSISFCQIQSLAIMPRYDDKYGSTRLYVGRLSSRTRSRELDKIFGRYGRIRGVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSGRGRSYSRSPVRSPSPRRGRSRDRSYSRDRSYSRSRSPVRRERSPVREDRSESPRHRSPGPSHSPPPAKARDDSPTYDEGNQQEERGDMSPENGGLAIQQDGSDYSDGPRRKSRSRSPVSPKTNGGGRSASPRDDRSPIDDDDDPRHSPRASESP 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1131 763 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 475 545 IPR000504 GO:0003723
Lele06g1131 763 MobiDBLite consensus disorder prediction 680 694 - -
Lele06g1131 763 FunFam Serine/arginine-rich splicing factor RS2Z32 467 550 - -
Lele06g1131 763 MobiDBLite consensus disorder prediction 606 622 - -
Lele06g1131 763 MobiDBLite consensus disorder prediction 741 763 - -
Lele06g1131 763 SUPERFAMILY Retrovirus zinc finger-like domains 555 603 IPR036875 GO:0003676|GO:0008270
Lele06g1131 763 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 164 223 - -
Lele06g1131 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 122 IPR027417 -
Lele06g1131 763 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 555 583 - -
Lele06g1131 763 Gene3D - 29 145 IPR027417 -
Lele06g1131 763 Gene3D - 555 582 - -
Lele06g1131 763 Gene3D - 583 628 - -
Lele06g1131 763 Pfam ABC transporter 37 133 IPR003439 GO:0005524
Lele06g1131 763 Gene3D - 465 553 IPR012677 -
Lele06g1131 763 ProSiteProfiles Zinc finger CCHC-type profile. 586 602 IPR001878 GO:0003676|GO:0008270
Lele06g1131 763 SUPERFAMILY RNA-binding domain, RBD 470 564 IPR035979 GO:0003676
Lele06g1131 763 Pfam Zinc knuckle 564 579 IPR001878 GO:0003676|GO:0008270
Lele06g1131 763 Pfam Zinc knuckle 585 602 IPR001878 GO:0003676|GO:0008270
Lele06g1131 763 MobiDBLite consensus disorder prediction 598 763 - -
Lele06g1131 763 ProSiteProfiles Zinc finger CCHC-type profile. 564 579 IPR001878 GO:0003676|GO:0008270
Lele06g1131 763 SMART rrm1_1 476 541 IPR000504 GO:0003723
Lele06g1131 763 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 477 538 IPR000504 GO:0003723
Lele06g1131 763 MobiDBLite consensus disorder prediction 624 665 - -
Lele06g1131 763 SMART c2hcfinal6 564 580 IPR001878 GO:0003676|GO:0008270
Lele06g1131 763 SMART c2hcfinal6 586 602 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1131 Lele-ChrLele06 7019682 7027013 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1131 06 7019682 7027013 Lele07g1312 07 7935912 7937901 hybridization
Lele06g1131 06 7019682 7027013 Lele08g1119 08 7022345 7025486 hybridization