Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1265 ATGTGGAGAACAGTGTGGGATTCGTATCCTGGCCGTCAAAGGTTTTCAGTACTTCCAAAAGATATCGTGAAGGACGGAATCGTTGCGTCGGCGTTCGAAAGGGTTAAGATACGAGCAGGTAGCAGACTGCAGAGCATTCCCTTCTGTCCACTACGATCTCTAGCACTAATGCCTCGTTACGATGATAAATACGGTAGTACCCGTCTATATGTGGGACGTTTGTCCTCAAGGACGCATACACGTGACCTGGACAAGATCTTTGGCAGATATGGGAGGTTTCTGGGGCTTTTGCCTAAACCTGGAAGGTCTGTGGTAGGAGGGTGGCCTTGGTGGAATTCGTGGAAATTCCTGTTGATTGTTGACTTTGGCGATTCTTTCTCTAATGTTATTGCAATTCGAGGGGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGTGATCCCCGAGATGCAGATGATGCAAGATATAACTTAGATGGCCGTGATGTGGATGGAAGTCGCATCATTGTCGAATTTGCAAAAGGGGGTCATCGTGGTTCCCGAGAATACTCGGGTAGAGGTCCTCCTCCTGGATCTGGGCGCTGCTTTAACTGTGGTCTTGATGGCCACTGGGCTCGGGATTGTAAAGCTGGGGACTGGAAGAACAAGTGTTACCGCTGTGGGGAAAGAGGTCACATAGAACGAAACTGCAAGAATAGTCCCAAGAAACTCAGTGGTCATGGACGAAGTTATTCCCGTTCGCCTGTCAGGTCACCTTCTCCTCGTCGTGGCAGAAGCCGTGATCAAAGTTACAGCCGAGATGGCAGCTACAGCCGATCAAGATCCCCTCTCCACAGAGAACGTAGCCCTGTTCATGAAGATAGATCAGAGTTTCCCCGCTACAGAAGCCCAGGACTCAATAATAGTCCTCCACCTTCCAAGACAAGGATCGATGGCCCTACTTATGATGAAGGCAATCAACAGAAGGAGAGAAGGGACATATCTCCTGAGAATGGTGGGCTGGCCACCCAGCAAGATGGGTCGGACTATAGTGACGGTCCTAGAAGAACGAGCAGAAGTAGAAGCCCTGTTAGTCCAAAAACTAATGGCGGTGGCCGCAGTGCTAGCCCGAGGGATGATAGGAGCCCCATTGACGATGATGATGACACCCGCCGTTCTCCTAGGGGCAGCGAGTCACCTTAA 1185 0.5004 MWRTVWDSYPGRQRFSVLPKDIVKDGIVASAFERVKIRAGSRLQSIPFCPLRSLALMPRYDDKYGSTRLYVGRLSSRTHTRDLDKIFGRYGRFLGLLPKPGRSVVGGWPWWNSWKFLLIVDFGDSFSNVIAIRGVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGGHRGSREYSGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSGHGRSYSRSPVRSPSPRRGRSRDQSYSRDGSYSRSRSPLHRERSPVHEDRSEFPRYRSPGLNNSPPPSKTRIDGPTYDEGNQQKERRDISPENGGLATQQDGSDYSDGPRRTSRSRSPVSPKTNGGGRSASPRDDRSPIDDDDDTRRSPRGSESP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1265 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 176 IPR000504 GO:0003723
Lele05g1265 394 SUPERFAMILY RNA-binding domain, RBD 62 196 IPR035979 GO:0003676
Lele05g1265 394 Pfam Zinc knuckle 216 233 IPR001878 GO:0003676|GO:0008270
Lele05g1265 394 Pfam Zinc knuckle 195 210 IPR001878 GO:0003676|GO:0008270
Lele05g1265 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 169 IPR000504 GO:0003723
Lele05g1265 394 Gene3D - 57 185 IPR012677 -
Lele05g1265 394 ProSiteProfiles Zinc finger CCHC-type profile. 217 233 IPR001878 GO:0003676|GO:0008270
Lele05g1265 394 SMART rrm1_1 68 172 IPR000504 GO:0003723
Lele05g1265 394 MobiDBLite consensus disorder prediction 332 366 - -
Lele05g1265 394 ProSiteProfiles Zinc finger CCHC-type profile. 195 210 IPR001878 GO:0003676|GO:0008270
Lele05g1265 394 MobiDBLite consensus disorder prediction 372 394 - -
Lele05g1265 394 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 186 214 - -
Lele05g1265 394 Gene3D - 186 213 - -
Lele05g1265 394 Gene3D - 214 261 - -
Lele05g1265 394 MobiDBLite consensus disorder prediction 229 394 - -
Lele05g1265 394 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 67 296 - -
Lele05g1265 394 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Lele05g1265 394 SMART c2hcfinal6 217 233 IPR001878 GO:0003676|GO:0008270
Lele05g1265 394 MobiDBLite consensus disorder prediction 255 294 - -
Lele05g1265 394 MobiDBLite consensus disorder prediction 237 253 - -
Lele05g1265 394 SUPERFAMILY Retrovirus zinc finger-like domains 186 234 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1265 Lele-ChrLele05 7894593 7898134 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1265 05 7894593 7898134 Lele07g1312 07 7935912 7937901 hybridization
Lele05g1265 05 7894593 7898134 Lele08g1119 08 7022345 7025486 hybridization