Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1038 ATGTGCTTGTGGGTCCAGTGGGCCTCCGCTGTGCGATCACTATCCATCACGCCTTTTGTTAATAACAAATCCTCTATGGAAGCCGCAAAGAATTTGTTTAGTTCATCCCCGTTTCCATCAAGAGCTAATCACTGGAGCGGTCCTCCCTCGTCGTCTTCATCTTCTTCTTTAGTTTTCACATTTCATGAACAAGCCACTCCCGCAGTTACCTCTAGGTCTGCTAGTTTTGCAGCTCAGCATTTTCCCGCATCGGTTCTTCTACAAGAGCAACGTGATGAGTGCAGACCTACACTGCGCATGCATAAGGAAGAAAAGACATCCCAGGCAACATTAAATACAAGGCATATGGATATGGCCTTAGTTCGTGAAGACAATAATCATGGCAATGCTGATCAGCTAGTGCATGACTTTAAGAAGCAATTGCAAATTTGGCCATGTTTAAGGAACTTGTTGAATTCCTTACCAGCAGAGGAAATTGAAACATCTTCAACTCTGCAGTCTGTTACCATTGACACAGAGAATCCTGCAGAAGTTGAAGAGTATGATGCAGTTGCTCTTGCTAAGCAAGCATTGTCTGCCTCAAAACCAGCTCCCTCGATAGCAACAGACTTGAAATCAATCAAAGCTGGTGATGATGTTTTACCTCCTCTAGGTTTGGCCTCCACAAGTTTTGATGACATTTCAGTTGGAAAGAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACAATTAAAGAAGAGAAAAAAATCAAAGGCAAAAGTCTTCGATGATGAAAGCTACCTTTCTAAAAAGGCGGAAGTAAAAGGAAGGTTACATGTAGAAAAGAAGATAAATGAAGGGTTTGATCAAAATGATCCCCTGCGCTTGTTCCTATGGGGTCCTGAAACAAAGCAACTTTTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTGAGATTGGAAGGAGTAAAGAGAAGACTTCAATCACAATTTGGGCGGGAACCAACTTTGGCTGAGTGGGCTGATGGTGTGGGCCTCACCTGTCAAGCCCTGCAGTTACAGCTTTATTCTGCTAATAGCAGCCGAGAGAAGCTGATTTATGCAAATTTAAGAATGGTAGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGTTTTCAGGACTTACTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCTCAAGCAGGCTGTCGTTTTGGTACTTATGCCTACTGGTGGATAAGGCAAACAATTAGGAAGGCCATATTTCAACATTCCAGGACAATTCGTCTGCCGGAGAATGTATATACCCTTTTGGGCAAGGTATCAGAGACAAAGAAATTGTACATTCGAGAAGGAAATCTACATCCCACCAAAGAAGAACTAGCAAGAAGGGTAGGAATTACAGTAGACAAGTTAGAAAAGTTGCTATATGTTGCAAGAATTCCAATTTCGATGCAACAAACAGTGTGGGCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACGGCAATTGAGGTCCCAGATGTGAGTGTTGGAAAACAGATGATGAGGCGGCATGTGCGAAACCTCTTGAGCATCTTGAGCCCAAAAGAAAGGAGGATAATCCGGCTAAGATTTGGTATCGAGGATGGCGAACAGAAGTCGTTATCAGAGATTGGGAACACGTTTGGTTTATCTAAGGAAAGGGTTCGACAGTTAGAGAGCCGAGCATTGTACAAGTTGAAGCAGTGCCTTGGGAGCCATGGACTTGATGCATATGCAGAATTGCTTGTGTAG 1803 0.4321 MCLWVQWASAVRSLSITPFVNNKSSMEAAKNLFSSSPFPSRANHWSGPPSSSSSSSLVFTFHEQATPAVTSRSASFAAQHFPASVLLQEQRDECRPTLRMHKEEKTSQATLNTRHMDMALVREDNNHGNADQLVHDFKKQLQIWPCLRNLLNSLPAEEIETSSTLQSVTIDTENPAEVEEYDAVALAKQALSASKPAPSIATDLKSIKAGDDVLPPLGLASTSFDDISVGKNKTVRSTRLLERQLKKRKKSKAKVFDDESYLSKKAEVKGRLHVEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLILQLQDLLRLEGVKRRLQSQFGREPTLAEWADGVGLTCQALQLQLYSANSSREKLIYANLRMVVHIAKHYQGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTLLGKVSETKKLYIREGNLHPTKEELARRVGITVDKLEKLLYVARIPISMQQTVWADQDTTFQEVTADTAIEVPDVSVGKQMMRRHVRNLLSILSPKERRIIRLRFGIEDGEQKSLSEIGNTFGLSKERVRQLESRALYKLKQCLGSHGLDAYAELLV 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1038 600 Pfam Sigma-70, region 4 532 585 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 Gene3D - 222 433 - -
Lele08g1038 600 ProSitePatterns Sigma-70 factors family signature 1. 388 401 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 ProSitePatterns Sigma-70 factors family signature 2. 557 583 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 Pfam Sigma-70 region 3 445 517 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 285 434 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 Pfam Sigma-70 region 2 365 433 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 437 510 IPR013324 -
Lele08g1038 600 CDD Sigma70_r4 526 584 - -
Lele08g1038 600 PIRSF Sigma_factor_SigC 21 600 IPR016262 -
Lele08g1038 600 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 360 587 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 Gene3D - 519 599 IPR036388 -
Lele08g1038 600 PRINTS Major sigma-70 factor signature 572 583 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 PRINTS Major sigma-70 factor signature 388 401 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 PRINTS Major sigma-70 factor signature 536 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 PRINTS Major sigma-70 factor signature 412 420 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 PRINTS Major sigma-70 factor signature 557 572 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele08g1038 600 Gene3D - 437 514 IPR036388 -
Lele08g1038 600 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 497 595 IPR013324 -
Lele08g1038 600 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 182 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1038 Lele-ChrLele08 6598230 6604287 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1038 08 6598230 6604287 Lele08g1038 08 6598230 6604287 ECH
Lele05g1188 05 7450330 7462527 Lele08g1038 08 6598230 6604287 hybridization
Lele06g1056 06 6567135 6570942 Lele08g1038 08 6598230 6604287 hybridization