Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele05g1188 | ATGGTGCGGCATGTAGATTTTCTGTTTGTGACTGAAACACTAGGGGATGCTTGGGCGAAAATTTACATACTGAATAATTTTGCTGAAGGGACAAGTTTCTATATTATTCAGTGGGGTCTGCGTCTTCTTGATGGCGATCCTAGTTACAGTCCAGGATACTACGGTGACATAATTCAACATGATACTGGTAGCATATATGATGGAAACTACTACCATGGCCATTATGATGCTGAGAGTAATCATATAGAGAATGATGAGATGATTGCACGGACTCTTCAAGAAGAATTTTCACAGCTAGACATAGCTGAAAGCACTAGATGTTCACAGGCAAGTGAGGAGCATTACCATGCTCCTGAGTTGGCATATGGATGGCATAACTCTTCAACGGTGAACCATTGCTCAGAAGGTGTAAAGATACTGCTTGCTTACCATAATTATGTCCAGGAAGGAGTTGATCATGTAGAACATTCTAGTTCATGTTCTAGTCCTTGTGAAGGGGGAGAATACTCATTGGAGCTGACTGATCCACTTGATGATGAAGTGGAAAGGAGATTGAGTCAAATGACTACAATTCCTGTATGCTTAGCGTCTTCTGCTTCTATAGATATTCTGTATACACCATCCAGTGATGGTAATTGTCAGTTTCATGCATTATCTGATCAATTGTATGACACACCTGAGTACCACAAGTTTGTGAGACGACAAGCGGTAAACCAGCTTAAGTCTCATCCGGAGATTTATGAGGGATATGTTCCCATGGAATATGGTGAATATTTGGAGAAGATGTCTAAGAGTGGTGAATGGGGTGATCATGTCACTCTTCAAGCAGTTGCAGATTCGTACGGTGTGCAAATATTCTTGATTACTTCTTTCAAGAATACGTGTTGCATAGAGATACTTCCTCATTTTGAGAAGCCAAAAAGAGTGTTCAGGCCGGAGGAATCGTGGAAGTTGATGGATGAAATTATATCTGAACTATTGAAGTTTTCCTATCAAACAATTGCTAGTGTTAATGTCTCGGCCTTATTTTCCTTAGCTTTTGGGCAGAGGTGCATTACAATTCCATCTATCCTCAAGGAGATCATAGTTGTGATAGCATTATGTTATGGTTCAGATATGCCTTCGAGCGAGTCAAGAATTAAGAAAAGGTGGTGGAACTTTGGGAGCTGCTGCGGCGGTGGTAAAGCCATTGCAAACATACCCTGCCCGTTGCTAACCGTGGAAACAGTGTGGACTCGGCAAGGAACTGAGGCTGCGGGGGACGATATCGCAGCGTTGCTGGTGGATACGGGCTCCGAGGGAACCGTTCCGGCGAGAACAGCCCTCACTTGGGAAATGAACTTGAAGTTAGTGGATGACCCAACAATCTTAGCCCGAGCTTTGGGCTGTGACCTGGGTGATACTTCTGCCAAGAATTTGTTTAGTTCATCCCCGTTTCCATCAAGAGCTAATCACTGGAGCGGTCCTCCCTCGTCTTCTTCATCTTCTTCTTTAGTTTTCACATTTCATGAACAAGCCACTCCCGCAGTTACCTCTAGGTCTGCTAGTTTTGCTGCTCAGCATTTTCCCGCCTCGGTTCTTCTACAAGAGCAACGTGACGAGTGCAGGCCTATACTGCGCATGCATAAAGAAGAAAAGACATCCCAGGCATCATTAAATACAAGGCATATGGATATGGCCTTAGTTCGTGAAGACAATAATCCTGGCAATGCTGATCAGCTAGTGCATGACTTTAAGCAGCAATTGCAAATTTGGCCATGTTTACGGAACTTGTTGACTTCCTTACCAGCAGAGGAAATTGAAACATCTTCAACTCTGCAGCCTGTTACAATGGACTCAGAGAATCCTGTAGAAGTTGAAGAGCATGATGCAATTGCTCTTGCTAAGGAAGCATTGTCAGCCTCAAAGCAAGCTGCCTTGATAGCTGCAGACTTGAAAACAATCAAAGCTGATGATGATGTTTTACCTCCTATAGGTGTGGCCTCCACAAGTTTTGATGGCATTTCACTTGGAAAGAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACAGTTAAAGAAGAGAAAAAAAGCGAAGGCAAAAGTCTTAGATGATGAAAGCTATCTTTCTCAACAGGCTGAAGTAAAAGGAAGGTTACATGTAGAAAAGAAGATAAATGAAGGATTTGATCAAAATGATCCCTTGCGCTTGTTCCTATGGGGTCCTGAAACAAAACAACTTTTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTGAGGTTGGAAGGAGTAAAGAGAAAACTTCAATCACAATTTGGGCGGGAACCAACTTTGGCTGAGTGGGCTGATGGTGTGGGCCTTACCTGTCAAGCCCTGCAGTTACAGCTTTATTCTGGTAACAGCAGCAGAGAGAAGCTTATTTATGCAAATTTACGAATGGTAGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGTTTTCAGGACTTATTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCCCAAGCAGGCTGTCGTTTCGGTACTTATGCCTACTGGTGGATAAGGCAAACAATTAGGAAGGCCATATTTCAACATTCCAGGACAATTCGTCTGCCGGAGAATGTATATACCCTTTTGGGCAAGGTATCAGAGACAAAGAAATTGTACATTCGAGAAGGACATCTACATCCCACCAAGGAGGAACTAGCAAGAAGGGTAGGAATTACAGTAGACAAGTTAGAAAAGTTGCTATATGTTGCAAGAATTCCAATTTCGATGCAACAAACAGTGTGGGCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACAGCAATTGAGGTCCCAGATGTGAGTGTTGGAAAACAGATGATGAGACGGCATGTGCGAAACCTCTTAAGCATCTTGAGTCCAAAAGAAAGGAGGATAATCCGGCTAAGATTCGGTATGGAGGATGGCGAACAGAAGTCATTATCAGAGATTGGAAACACATTTGGTATATCTAAGGAAAGAGTTCGACAGTTAGAGAGCCGAGCATTGTACAAGCTGAAGCAGTGCCTTGGCAGCCAAGGACTTGATGCATATGCAGAATTGCTTGTGTAG | 3126 | 0.4306 | MVRHVDFLFVTETLGDAWAKIYILNNFAEGTSFYIIQWGLRLLDGDPSYSPGYYGDIIQHDTGSIYDGNYYHGHYDAESNHIENDEMIARTLQEEFSQLDIAESTRCSQASEEHYHAPELAYGWHNSSTVNHCSEGVKILLAYHNYVQEGVDHVEHSSSCSSPCEGGEYSLELTDPLDDEVERRLSQMTTIPVCLASSASIDILYTPSSDGNCQFHALSDQLYDTPEYHKFVRRQAVNQLKSHPEIYEGYVPMEYGEYLEKMSKSGEWGDHVTLQAVADSYGVQIFLITSFKNTCCIEILPHFEKPKRVFRPEESWKLMDEIISELLKFSYQTIASVNVSALFSLAFGQRCITIPSILKEIIVVIALCYGSDMPSSESRIKKRWWNFGSCCGGGKAIANIPCPLLTVETVWTRQGTEAAGDDIAALLVDTGSEGTVPARTALTWEMNLKLVDDPTILARALGCDLGDTSAKNLFSSSPFPSRANHWSGPPSSSSSSSLVFTFHEQATPAVTSRSASFAAQHFPASVLLQEQRDECRPILRMHKEEKTSQASLNTRHMDMALVREDNNPGNADQLVHDFKQQLQIWPCLRNLLTSLPAEEIETSSTLQPVTMDSENPVEVEEHDAIALAKEALSASKQAALIAADLKTIKADDDVLPPIGVASTSFDGISLGKNKTVRSTRLLERQLKKRKKAKAKVLDDESYLSQQAEVKGRLHVEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLILQLQDLLRLEGVKRKLQSQFGREPTLAEWADGVGLTCQALQLQLYSGNSSREKLIYANLRMVVHIAKHYQGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTLLGKVSETKKLYIREGHLHPTKEELARRVGITVDKLEKLLYVARIPISMQQTVWADQDTTFQEVTADTAIEVPDVSVGKQMMRRHVRNLLSILSPKERRIIRLRFGMEDGEQKSLSEIGNTFGISKERVRQLESRALYKLKQCLGSQGLDAYAELLV | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele05g1188 | 1041 | Gene3D | - | 960 | 1040 | IPR036388 | - | |
| Lele05g1188 | 1041 | CDD | Sigma70_r4 | 967 | 1025 | - | - | |
| Lele05g1188 | 1041 | Gene3D | - | 618 | 874 | - | - | |
| Lele05g1188 | 1041 | ProSitePatterns | Sigma-70 factors family signature 2. | 998 | 1024 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | Pfam | Sigma-70 region 3 | 886 | 958 | IPR007624 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | Pfam | Sigma-70, region 4 | 973 | 1026 | IPR007630 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | PANTHER | RNA POLYMERASE SIGMA FACTOR RPO | 613 | 1037 | - | - | |
| Lele05g1188 | 1041 | ProSiteProfiles | OTU domain profile. | 202 | 309 | IPR003323 | - | |
| Lele05g1188 | 1041 | SUPERFAMILY | Sigma3 and sigma4 domains of RNA polymerase sigma factors | 938 | 1036 | IPR013324 | - | |
| Lele05g1188 | 1041 | TIGRFAM | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | 801 | 1028 | IPR014284 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | SUPERFAMILY | Sigma2 domain of RNA polymerase sigma factors | 725 | 875 | IPR013325 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | Pfam | Sigma-70 region 2 | 806 | 874 | IPR007627 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | Gene3D | - | 878 | 955 | IPR036388 | - | |
| Lele05g1188 | 1041 | SUPERFAMILY | Sigma3 and sigma4 domains of RNA polymerase sigma factors | 878 | 951 | IPR013324 | - | |
| Lele05g1188 | 1041 | SUPERFAMILY | Cysteine proteinases | 205 | 299 | IPR038765 | - | |
| Lele05g1188 | 1041 | Gene3D | - | 201 | 315 | - | - | |
| Lele05g1188 | 1041 | Pfam | OTU-like cysteine protease | 209 | 293 | IPR003323 | - | |
| Lele05g1188 | 1041 | ProSitePatterns | Sigma-70 factors family signature 1. | 829 | 842 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | PRINTS | Major sigma-70 factor signature | 998 | 1013 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | PRINTS | Major sigma-70 factor signature | 853 | 861 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | PRINTS | Major sigma-70 factor signature | 977 | 989 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | PRINTS | Major sigma-70 factor signature | 1013 | 1024 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
| Lele05g1188 | 1041 | PRINTS | Major sigma-70 factor signature | 829 | 842 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele05g1188 | Lele-ChrLele05 | 7450330 | 7462527 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele05g1188 | 05 | 7450330 | 7462527 | Lele05g1188 | 05 | 7450330 | 7462527 | ECH | |
| Lele05g1188 | 05 | 7450330 | 7462527 | Lele07g1232 | 07 | 7468557 | 7472620 | hybridization | |
| Lele05g1188 | 05 | 7450330 | 7462527 | Lele08g1038 | 08 | 6598230 | 6604287 | hybridization |