Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1056 ATGAGGATAGTTAAATTGGAAGTTTTCACATTTCATGAAAAAGCCACTCCCACAGTTACCTCTAGGTCTGCTAGTTTTGCAGCTCAGCATTTTCCCGCATCGGTTCTTCTACAAGAGCAACGTGATGAGTGCAGACCTGCGCTGCGCATGCATAAGGAAGAAAAGACATCCCAGGCAACATTAAATACAAGGCATATGGATATGGCCTTAGTTCGTGAAGACAATAATCATGGCAATGCTGATCAGCTAGTGCATGACTTTAAGAACCAATTGCAAATTTGGCCATGTTTAAGGAACTTGTTGACTTCCTTACCAGCAGAGGAAATTGAAACGTCGTCAACTCTGCAGCCTGTTACCATTGACACAGAGAATCCTGCAGAAGTTGAAGAGTATGATGCTGTTGCTCTTGCTAAGCAAGCATTGTCTGCCTCAAAACCAGCTGCCTCGATAGCTGCAGACTTGAAATCAATCAAAGCTGATGATGATGTTTTACCTCCTCTAGGTTTGGCCTCCACAAGTTTTGATGACATTTCCCTTGGAAAGAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACAATTAAAGAAGAGAAAAAAATCAAAGGCAAAAGTCTTCGATGATGAAAGCTACCTTTCTAAAAAGGCTGAAGTAAAAGGAAGGTTACATGTAGAAAAGAAGATAAATGAAGGGTTTGATCAAAATGATCCCCTTCGCTTGTTCCTATGGGGTCCTGAGACAAAGCAACTTTTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTGAGATTGGAAGGAGTAAAGAGAAGACTTCAATCACAATTTGGACGGGAACCAACTTTGGCTGAGTGGGCTGATGGTGTGGGCCTCACCTGTCTAGCCCTGCGGTTACAGCTTTATTCTGCTAATTGCAGCCGAGAGAAGCTGATTTATGCAAATTTACGAATGGTTGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGTTTTCAGGACTTATTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCTCAAGCAGGCTGTCGTTTTGGTACTTATGCCTACTGGTGGATAAGGCAAACAATTAGGAAGGCCATATTTCAACATTCCAGGACAATTCGTCTGCCGGAGAATGTATATACCCTTTTGGGCAAGGTATCAGAGACAAAGAAAGTGTACATTCGAGAAGGAAATCTACATCCCACCAAAGAAGAACTAGCAAGAAGGGTAGGAATTACAGTAGACAAGTTAGAAAAGTTGCTATATGTTGCAAGAATTCCAATTTCGATGCAACAAACAGTGTGGGCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACAGCAATTGAGGTCCCAGATGTGAGTGTTGGAAAACAGATGATGAGGCGGCATGTGCGAAACCTCTTAAGCATCTTGAGCCCAAAAGAAAGGAGGATAATCCGGCTAAGATTTGGTATCGAGGATGGTGAACAGAAGTCATTATCAGAGATTGGGAACACGTTTGGTTTATCTAAGGAAAGGGTTCGACAGTTAGAGAGCCGAGCATTGTACAAGTTGAAGCAGTGCCTTGGGAGCCACGGACTTGATGCATATGCGGAATTGCTTGTGTAG 1653 0.4277 MRIVKLEVFTFHEKATPTVTSRSASFAAQHFPASVLLQEQRDECRPALRMHKEEKTSQATLNTRHMDMALVREDNNHGNADQLVHDFKNQLQIWPCLRNLLTSLPAEEIETSSTLQPVTIDTENPAEVEEYDAVALAKQALSASKPAASIAADLKSIKADDDVLPPLGLASTSFDDISLGKNKTVRSTRLLERQLKKRKKSKAKVFDDESYLSKKAEVKGRLHVEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLILQLQDLLRLEGVKRRLQSQFGREPTLAEWADGVGLTCLALRLQLYSANCSREKLIYANLRMVVHIAKHYQGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTLLGKVSETKKVYIREGNLHPTKEELARRVGITVDKLEKLLYVARIPISMQQTVWADQDTTFQEVTADTAIEVPDVSVGKQMMRRHVRNLLSILSPKERRIIRLRFGIEDGEQKSLSEIGNTFGLSKERVRQLESRALYKLKQCLGSHGLDAYAELLV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1056 550 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 447 545 IPR013324 -
Lele06g1056 550 CDD Sigma70_r4 476 534 - -
Lele06g1056 550 PRINTS Major sigma-70 factor signature 507 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 PRINTS Major sigma-70 factor signature 362 370 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 PRINTS Major sigma-70 factor signature 522 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 PRINTS Major sigma-70 factor signature 486 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 PRINTS Major sigma-70 factor signature 338 351 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 311 537 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 Pfam Sigma-70 region 2 315 383 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 ProSitePatterns Sigma-70 factors family signature 1. 338 351 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 387 460 IPR013324 -
Lele06g1056 550 PIRSF Sigma_factor_SigC 4 550 IPR016262 -
Lele06g1056 550 ProSitePatterns Sigma-70 factors family signature 2. 507 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 Gene3D RNA Polymerase Primary Sigma Factor 91 386 - -
Lele06g1056 550 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 234 384 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 Gene3D - 387 464 IPR036388 -
Lele06g1056 550 Gene3D - 469 549 IPR036388 -
Lele06g1056 550 Pfam Sigma-70, region 4 482 535 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 Pfam Sigma-70 region 3 394 467 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lele06g1056 550 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 130 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1056 Lele-ChrLele06 6567135 6570942 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1056 06 6567135 6570942 Lele06g1056 06 6567135 6570942 ECH
Lele06g1056 06 6567135 6570942 Lele07g1232 07 7468557 7472620 hybridization
Lele06g1056 06 6567135 6570942 Lele08g1038 08 6598230 6604287 hybridization