Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0983 ATGGATGGATCTCGTAAACACCAGGTATCCTTGAGAGGAGCAAGCGCAAAGGAGATAACAAGGGACGCCCTTCTTGAGAAGGTTTCCCGGGAAAGAGAACTTCGCAATTATGCTAAACGGGCTACTGCTGCTGCTCTATTCATTCAGAGAGTATGGAGGCGCTACAAGGTTACAAGGATGGTTGCTCAGCAACTTCAGCAGGAGTGGGAGACATTGGTGAATCATTACACTGGTGTTACGGCAGCAATGTGGATTGCTAACAATTTGTTGCGACCGTTTCTTTTCTTTATAAGCCGGTTCTCATCTGAGCATCAGAAGGTTCACGGCAAGAAAATAGACTCTATGAGGATTTGCTTTACAATCCTATTGGAGAGCCTGAACTCTTCTGATTCAAAGAGGAACTTCTGCTCTCTAGGAATTGGTACATCTGAAGAAAGGAGAATTTGGAGTCACCAAGCTCGAGGGTTGATTTCTGTTGGCTTTGTCATTCTTTCAGAGTTTAGTAAAGGCATTTTGAGAAATCAAGATATTACCTTGGTTACCTCCCTTGCAATGCGTGTTCTTGTTATCTTAACTGATCTGAAAGGCTGGAAAGGCATTACTGATGACAATCGTCAAGATGCTGATATAGCAGTGAAAGGTTTGATTGAGTACATGGGGAGTAATGCCAGTGGTAGTTACGTGTCTATTAGTAGATATATTAGTTCATTGGATAACTATTCTTCACAAACAAAGAATATTAACCAGACAGATGATAAATTTTTAATTACTGCCAGTACAATAACTTTGGCGTTGCGGCCATTTTATTTGAGAAGCTCTAATATTGTCAGTGTCCCTGCTATGTTGGATGTGAACCATGCTGCTAGGCAGTATTGCATATATATGCTGACAATTCCTTGGCTTGTGAAGCGTCTGCCTCCTGTTCTTCGACCTGCTTTAAAGCACAACTGTATTTTGTTCCCATGCTTTCTTGGTATATTGATTTTGAGAGAGAATATTTCAATGGAGACATCACATTTGTTTCATTTAGACACTCTTATCTCTTCCAAGGCAATTCCGGCAGTTGGTTGGGCTCTGACTAACATTATCTGCCTAGCGATGGGGAATGAAAATGAATCTGTGGATCCTCAATGCTTCCATCAAGGGTTAGACCATGCATTATATGTCCATGTTGTTAACTATCTTGTGGAAGCCCTACTGGCTCATCTTAATGATGTTGGATGGATTAAAAAGGGGAAGAAAGCTATTCAGAATGATGTTGAAGCTTCAGCAGAACCCATGAATACAATTTTTGATGAGAATGAAGCGGCGTACGACTCCTTACTGATTTCCTACATAGATCAATTTAGGCCTGTATGTCAGCAGTGGCATCTTCAAAATCTCTTGGCTGCATCAAACAAAGTTGCTACCAACGGGGCTGGGATTCTGCTTCCAAATGGTCTGGAATGCTTTGGAAAGCTGGACTTAAGTGATATTGCTCTGTTTTATTCAAACATGCTAAATATATATTCAGTCTTGAATCCAATTCGTGGCTCCTTGCCAGTTCTCAACATGCTATCCTTTACTCCTGGATTTCTTGTCAAGGTGTGGCATGTATTGGAGGATTCCATTTTTCATGAAGACAATCACACTTCTGATAACCGCATGAGTGAAAAAAGCAAACATAATGCATCTGAGAGGAGGCTAAAACATGTCAGTAAGGATGGGGTTAATAAGTGGGTCGGTGTTCTTCATAAATTAACTGGTAAGTTCCAAGCTGCAACGAATAATGTTGAACCCATCAGCAGTCATCGTGAGCCTAGCCAAACGAATGAGGATTCATCTGATGTATGGGACATAGAGCCTATGAGGCGTGGTCCACAAGGCATTTCTAAAGATACATTTGCTCTACTTCATATATTCTGTGCCACCTATTCTCACCTACTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTTAAATTAGAGAAGCAACGAAGAATTGCATCAATGCTCAATACTCTGGTGTATAATGGTTTGTCCCATGGTATTAGTGAGCAGAATAGACCCCTCATGGACTGCGCTATCAGATGCTTACATTTAATGTATGAAAGGAATTGCCGGCATCAATTTTGTCCTCCTGATTTGTGGCTTTCCCCTGCTAGAAATAGCCGGCCTCCTATTGCAGTGGCTGCCAGAACTCATGAAATTTCATCAGTCAATATAAGATATGATGATTCATTGACTGTCCCGAGTATGGGTTCTGTTATCACCACAACTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGAGAGTTCATTAAGATGGATAAAGCCTCCCGAAAAATGGCCGGTGAAATTTCTGAACCTGGTTCACGAGCTATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCAGCAACTAAATTCCCTTGGGACAAGGTTGAAATCATCCATCCATGTTTCTTTTGTGAGTGAATGTGGCCTTCCTGAGGCTGGCCTGGATTATGGTGGGTTATCTAAAGAATTTTTAACAGACATATCAAAAGCGGCCTTTGCCCCAGAATATGGGCTATTTTCCCAAACCTCAACCTCGGACAGGCTTCTAATACCAAATTCTTCTGCAAGATTTTTGGATAATGGTCTTCAGATGATCGAGTTTCTTGGAAGAGTAGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTATCTCACGTTTTTGTACAAAAATTATTGGGGAGATATAGCTTTCTTGACGAGTTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGCATTATGATGGTGATGTCGAGGAGCTCTCTCTTGATTTTACTGTTACTGAAGAATCATTTGGGAAATGGCATGCTGTTGAGCTAAGGTCTGGTGGCAGAGATATCTTGGTGACGAATGAGAACAAAATGCAGTACATACATGCGATGGCAGACTACAAACTTAATCAACAGATATTGCCCTTCTCAAATGCATTCTATAGAGGATTGACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCAAGTGAATTTAATCAGTTACTTTCAGGTGGACAGTATGATATTGATATTGATGATTTAAAAAATAACACTCAATACACTGGTGGTTATAATGAAGGAAGTCGGACAATCAAGATATTTTGGGAGGTGATTAAAGACTTTGAACCCCAGGAACGCTGCATGCTTCTTAAATTTGTCACTAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATATTTGCAGCCAACTTTTACTATCCACAAGGTTGCTAGTGACGCCCCTCTTTGGGCGTCATTTGGAGGACAGGATGTAGAGCGGCTTCCTTCAGCTTCAACCTGCTACAATACCCTCAAGCTTCCAACCTACAAACGTGCAAGTACATTGAGAACGAAGCTTCTATATGCAATCAGTTCAAATGCCGGATTTGAGCTCTCTTAA 3492 0.4072 MDGSRKHQVSLRGASAKEITRDALLEKVSRERELRNYAKRATAAALFIQRVWRRYKVTRMVAQQLQQEWETLVNHYTGVTAAMWIANNLLRPFLFFISRFSSEHQKVHGKKIDSMRICFTILLESLNSSDSKRNFCSLGIGTSEERRIWSHQARGLISVGFVILSEFSKGILRNQDITLVTSLAMRVLVILTDLKGWKGITDDNRQDADIAVKGLIEYMGSNASGSYVSISRYISSLDNYSSQTKNINQTDDKFLITASTITLALRPFYLRSSNIVSVPAMLDVNHAARQYCIYMLTIPWLVKRLPPVLRPALKHNCILFPCFLGILILRENISMETSHLFHLDTLISSKAIPAVGWALTNIICLAMGNENESVDPQCFHQGLDHALYVHVVNYLVEALLAHLNDVGWIKKGKKAIQNDVEASAEPMNTIFDENEAAYDSLLISYIDQFRPVCQQWHLQNLLAASNKVATNGAGILLPNGLECFGKLDLSDIALFYSNMLNIYSVLNPIRGSLPVLNMLSFTPGFLVKVWHVLEDSIFHEDNHTSDNRMSEKSKHNASERRLKHVSKDGVNKWVGVLHKLTGKFQAATNNVEPISSHREPSQTNEDSSDVWDIEPMRRGPQGISKDTFALLHIFCATYSHLLLVLDDIEFYEKQVPFKLEKQRRIASMLNTLVYNGLSHGISEQNRPLMDCAIRCLHLMYERNCRHQFCPPDLWLSPARNSRPPIAVAARTHEISSVNIRYDDSLTVPSMGSVITTTPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFQQLNSLGTRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSDRLLIPNSSARFLDNGLQMIEFLGRVVGKALYEGILLDYSLSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVEELSLDFTVTEESFGKWHAVELRSGGRDILVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGQYDIDIDDLKNNTQYTGGYNEGSRTIKIFWEVIKDFEPQERCMLLKFVTSCSRAPLLGFKYLQPTFTIHKVASDAPLWASFGGQDVERLPSASTCYNTLKLPTYKRASTLRTKLLYAISSNAGFELS 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0983 1163 Gene3D Hect, E3 ligase catalytic domain 921 1000 - -
Lele08g0983 1163 Gene3D Hect, E3 ligase catalytic domain 1038 1162 - -
Lele08g0983 1163 MobiDBLite consensus disorder prediction 543 562 - -
Lele08g0983 1163 Pfam HECT-domain (ubiquitin-transferase) 850 1163 IPR000569 GO:0004842
Lele08g0983 1163 ProSiteProfiles HECT domain profile. 819 1163 IPR000569 GO:0004842
Lele08g0983 1163 SUPERFAMILY Hect, E3 ligase catalytic domain 795 1156 IPR035983 GO:0004842
Lele08g0983 1163 CDD HECTc 795 1161 IPR000569 GO:0004842
Lele08g0983 1163 FunFam Putative Ubiquitin-protein ligase E3C 921 1000 - -
Lele08g0983 1163 Gene3D Hect, E3 ligase catalytic domains 797 1035 - -
Lele08g0983 1163 FunFam E3 ubiquitin-protein ligase UPL7 1038 1162 - -
Lele08g0983 1163 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1163 IPR044611 GO:0000209|GO:0061630
Lele08g0983 1163 MobiDBLite consensus disorder prediction 589 613 - -
Lele08g0983 1163 SMART hect_3 813 1163 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0983 Lele-ChrLele08 6239642 6249438 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0983 08 6239642 6249438 Lele08g0983 08 6239642 6249438 ECH
Lele05g1132 05 7070163 7084557 Lele08g0983 08 6239642 6249438 hybridization
Lele06g0996 06 6178365 6187657 Lele08g0983 08 6239642 6249438 hybridization