Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0842 ATGACCCGTTTCTCAGAGAAGATCCGCCTTTCTTCGCTGGTCGTCAAACCGACCCGTTTTCTCTCTCAGAAGCTTACTCTCCTCCCTCTCTCCGCCTTCCATCTCTGCAAGTCCCTTGCTCGCTCCCTACTCTCCAAAACCCTCTCCTTCCTCACCATGGACAGTTTATTCTCGGATCACAATGATTACTTCTCGGACCTCGATTCCCGTCCCCAACGTCGCTTCGTCCGAGAAGAAGAGCCTCCATTGGAGAATGAGCCCCTCTACTTGGTTCTTTACAGGTGGTGGAAGGAAGTACAAGGGGACGCTGATCGAGTAGAACATGTCCTATACACAGCATCAACGAGCTCCGATTTTGAGTCGGACTCAGAAATTGTCCTCCAGTTAAGAAAGGAAGACAACCGGGAGGAAACGATGAATAGTCAGATGGGATCTTCAGGCCGTCAATATGCGTTGGTTCCTGAAGGTTTGTGGTTGCGTGCTCTTAAAAGGTGTAGTGATAATAGTAATGCAGGGAAGAATTTTGGGAGCCCCTTCTATGCAGATGATTGCTTGCCAGATTTGTTCTCCTTGCAAGTTAGGATGTTTGTTTCATGGGAAACAAATTCATTGGTAGCAAAGATAAGCCAAAAGGAAAATACGGTTGATGCCTACATGAAAGCCTGCAATATTTTCAGCTCTGAATATGACCCAGTACACATTTTGGACTTCTCAGGCCAGACAACTCAATTTTTCATAGACGATAATGAGTATTCTGGGCAACTTGAAAAAGGGGTTCTCTTGGAGCTGCAAGTTTATGGACTTTCTGATTCTATAAAGGTTAATGGAAGCAATGAGATGTTTGTAGATAGATCTACGGTGGGATGTTCGTCTCACAGTGGCTCTGTTATGATGAATGGGACCACTCACAATGTGAATTCCAATGTAACAGCTATGAACTCCTTTCAAAGGAGTAGCTATAAAGCAGTTGGTTCTTTGGGCTTGACAGGATTACAGAATCTTGGAAACACTTGTTTTATGAACAGTGCTATTCAATGTCTGGTTCACACCCCCAAGCTTGTTGACCATTTCCTGGGAGATTACCGGAAAGAAATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGGGATTTACTTAGAAAGTTGTGGTTTCCTGGAGCAAGGCCTGTGGCACCAAGAATGTTCAAGATGAAGCTTGCTAATTTTGCTCCTCAGTTTAATGGTTATAACCAGCATGATGCTCAAGAACTTCTTGCTTTTTTGTTGGATGGACTCCATGAAGACCTTAATCGTGTAAAGCGCAAACCATATCACGAAGTCAAAGATGAAGATGGTCGTCCAGATGAAGAAGTATCAGAAGAATATTGGCATAATCACCTTGCACGCAATGACTCCATAATAGTTGATTTGTGCCAAGGTCAGTTCCGTTCAACATTGGTCTGCCCTGTTTGCAAGAAGATTTCTATCACTTTTGACCCTTTTATGCACCTATCTTTGCCATTACCTTCTGCAACAATGCGGACAATTACTTTGACTGTCCTGAGCACTGATGGGATTGCCCTGCCTTCCACATTTACCATAACATTACCCAAGAGTGGATTATTGAAGGATCTTATTGAGGCCTTAGGTGATGCATGTTCCTTAAGAGATGATGAGACGCTCTTGGTCGCGGAGATATACAGGTATCGCATCTGTCGTCTGTTGGAGGAACCATCTGATTCATTAGCCTTGATTAGAGATGAGGACAAACTAGTTGCTTATCAATTGCCAAAAGATGAGGCTGGCCCCTTGGTTGTTTTCATGCATCAGCAGGTGACGAAGGAGTGCAGTTTCGGAAGGGAGAAGTTGATAGAAAGTTTGTTCGGCATTCCTATTGTGGCAAGGCTGCCCAATGTTTCCTGTGGATATGACATTCTCAGGGAGTTTCTGAAGTTAATTAATCCATTTCTGATGCCCTCTGAAGATTTCTTAGATGAGCATGATAATGATATTGAAGTTAGTAAAGATAAGGAGTTGAGTGATGCCACTGGTTCTGCGTGCTCGGAAGGTGATTCAGATTCAGATTTGGAGGCTGACTTTAGATTCTACTTAACTGCACGGCTAGGAATGGAGAATGTGGAGATAGAAATGGATAAACCATTACCATTTACACTGCTACCCAAGAAGCTGGAGGTTTCTGTCTTATGGTCTGATAAGATGATAGCAAAATATGATACATGCCTACTCAGCTCATTGCCTGAGGTTTTCAAGCCAAATTTATTGACCAAAAGAACACAAGAATCTATTTCTGTTTACAAGTGCCTTGAAGCATTCTTAAAAGAGGAGCCTCTTGGGCCAGATGACATGTGGTTCTGTCCTAAATGCAAAAAACCTCAGCAAGCGACTAAAAAACTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTTCATTTGAAGAGGTTTTCATTCAGCCGATACTTCAAGAACAAGCTAGAAACATTTGTCGATTTCCCAATCAATGATTTGGACCTGTCAACATATGTTGCCCACAAGAATAGCCCATCTTCCCCCCATTACGAGTTGTATGCAATCAGCTGTCATTATGGAGGATTGGGAGGAGGTCATTATACAGCATTTGTTCGTTATGGACATGATAAATGGTACGAGTTTGATGATAGCAGGGTTGTCCCTGTGAGGGAGGACATGGTAAAGACTTCTGCTGCTTATGTTCTTTTCTACAGAAAAGTTTAG 2748 0.4269 MTRFSEKIRLSSLVVKPTRFLSQKLTLLPLSAFHLCKSLARSLLSKTLSFLTMDSLFSDHNDYFSDLDSRPQRRFVREEEPPLENEPLYLVLYRWWKEVQGDADRVEHVLYTASTSSDFESDSEIVLQLRKEDNREETMNSQMGSSGRQYALVPEGLWLRALKRCSDNSNAGKNFGSPFYADDCLPDLFSLQVRMFVSWETNSLVAKISQKENTVDAYMKACNIFSSEYDPVHILDFSGQTTQFFIDDNEYSGQLEKGVLLELQVYGLSDSIKVNGSNEMFVDRSTVGCSSHSGSVMMNGTTHNVNSNVTAMNSFQRSSYKAVGSLGLTGLQNLGNTCFMNSAIQCLVHTPKLVDHFLGDYRKEINYENPLGMNGELALAFGDLLRKLWFPGARPVAPRMFKMKLANFAPQFNGYNQHDAQELLAFLLDGLHEDLNRVKRKPYHEVKDEDGRPDEEVSEEYWHNHLARNDSIIVDLCQGQFRSTLVCPVCKKISITFDPFMHLSLPLPSATMRTITLTVLSTDGIALPSTFTITLPKSGLLKDLIEALGDACSLRDDETLLVAEIYRYRICRLLEEPSDSLALIRDEDKLVAYQLPKDEAGPLVVFMHQQVTKECSFGREKLIESLFGIPIVARLPNVSCGYDILREFLKLINPFLMPSEDFLDEHDNDIEVSKDKELSDATGSACSEGDSDSDLEADFRFYLTARLGMENVEIEMDKPLPFTLLPKKLEVSVLWSDKMIAKYDTCLLSSLPEVFKPNLLTKRTQESISVYKCLEAFLKEEPLGPDDMWFCPKCKKPQQATKKLDLWRLPEILVVHLKRFSFSRYFKNKLETFVDFPINDLDLSTYVAHKNSPSSPHYELYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVVPVREDMVKTSAAYVLFYRKV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0842 915 Gene3D Cysteine proteinases 619 915 - -
Lele08g0842 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 858 875 IPR018200 GO:0004843|GO:0006511
Lele08g0842 915 Pfam Ubiquitin carboxyl-terminal hydrolase 329 912 IPR001394 GO:0004843|GO:0016579
Lele08g0842 915 CDD Peptidase_C19R 743 913 - -
Lele08g0842 915 SUPERFAMILY Cysteine proteinases 327 914 IPR038765 -
Lele08g0842 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 330 345 IPR018200 GO:0004843|GO:0006511
Lele08g0842 915 Gene3D Cysteine proteinases 314 530 - -
Lele08g0842 915 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 329 915 IPR028889 -
Lele08g0842 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 257 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0842 Lele-ChrLele08 5294732 5302204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0842 758 915 Miscellaneous Gene Families AT4G31670 32.919 3.07e-18 87.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0993 05 6126649 6132868 Lele08g0842 08 5294732 5302204 hybridization
Lele06g0852 06 5280699 5287225 Lele08g0842 08 5294732 5302204 hybridization