Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0852 ATGGACAGTTTATTCTCAGATCACAATGATTACTTCTCGGACTTCGATTCCCGTCCCCAACGTCGCTTCGTCCGAGAAGAAGAGCCTCAATTGGAGAATGAGCCCCTCTACTTGGTTCTTTACAGGTGGTGGAAGGAAGTACAAGGGGACGCTGATCAAGTAGAACGTGTCCTATACACAGTATCAACGAACTCTGATTCTGAGTCGGACTCAGAAATTGTCCTCCAGTTAAGAAAGGAAGACAACCGGGAGGAAACGATGGATAGTCAGATGGGATCTTCAGGCCGTCAATATGCGTTGGTTCCTGAAGGTTTGTGGTTGCGTGCTCTTAAAAGGTCCTGTAGAATGGGAAGCCATAATGCTTTCACGTCGAGATTCTTTGCCCCCCACACTTCCTGTATCCTAGCAGAACTTATGCGACGCTATTGGTGTAGTGATAATAGTAATGCAGTGAGGGATTTTGGGAGCCCCTTCTATGCAGATGATTGCTTGCCAGATTTGTTCTCCTTGCAAGTTAGGATGTTTGTTTCATGGGAAACAAATTCATTGGTAGCAAAGATAAGCCAAAAGGAAAATACGGTTGATGCCTACATGAAAGCCTGCAATATTTTCGGCTCTGAATATGCTGTACACATTTTGGACTTCTCAGGCCAGACAACTCAATTTTTCATAGACGATAATGAGTATTCTGGGCAACTTGAAAAAGGGGTTCTCTTGGAGCTGCAAGTTTATGGACTTTCTGATACTATGAAGGTTAATGGAAGCAATGAGATGTTTGTAGATAGATCTACGGTGGGATGTTCGTATCACAGTGGCTCTGTTATGATGAATGGGACCACTCACAATGTGAATTCCAATGAACTTCTTGCTTTTTTGTTGGATGGACTCCATGAAGACCTTAATCGTGTAAAGCGCAAACCATATCACGAAGTAAAAGATGAAGATGGTCGTCCAGATGAAGAAGTAGCAGAAGAATATTGGCATAACCACCTTGCACGCAATGACTCCATAATAGTTGACTTGTGCCAAGGTCAGTTCCGTTCGACATTGGTCTGCCCTGTTTGCAAGAAGGTTTCTATCACTTTTGACCCTTTTATGCACCTATCTTTGCCATTACCTTCTGCAACAATGCGGACAATTATTTTGACTGTCCTGAGCACTAATGGGATTGCCCTGCCTTCCACATTTACCATAACATTACCCAAGAGTGGATTATTGAAGGATCTTATTGAGGCCTTAGGTGATGCATGTTCCTTAAGAGATGATGAGATGCTCTTGGTCGCTGAGATATACAGGTATCGCATCTGTCGTCTGTTGGAGGAACCATCTGATTCATTAGCCTTGATTAGAGATGAGGACAAACTAGTTGCTTATCGATTGCCAAAAGATGAGGCTGGCCCCTTCGTTGTTTTCATGCATCAGCAGGTGACGAAGGAGTGCAGTTTTGGAAGGGAGAAGTTGGTAGAAAGTTTGTTCGGCATTCCTATTGTGGCAAGGTTGCCCAATGTTTCCTGTGGATATGACATTCGCAGGGAGTTTCTGAAGTTAATTAATCCATTTCTGATGCCCTCTGAAGATTTCTTAGATGAGCATGATAATGATATTGAAGTTAGTAAAGATAAGGAGTTGAGTGATGCCACTGGTTCTGCGTGCTTGGAAGGTGATTCAGATTCAGATTTGGAGGCTGACTTTAGATTCTACTTAACTGCACGGCTAGGAATGGAGAATGTCGAGATAGAAATGGATAAACCATTACCACTCACACTGCTACCCAAGAAGCTGGAGGTTTCTGTCTTATGGTCTGATAAGATGATAGCAAAATATGATACTTGCCTACTCAGCTCATTGCCTGAGGTTTTCAAGCCAAATTTATTCGCCAAAAGAACACAAGAATCTGTTTCTGTTTACAAGTGCCTTGAAGCATTCTTAAAAGAGGAGCCTCTTGGGCCAGATGACAAGTGGTTCTGTCCCAAATGCAAAAAACCTCAGCAAGCGACTAAAAAACTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTTCATTTGAAGAGGTTTTCATTCAGCCGATACTTCAAGAACAAGCTAGAAACATTTGTCGATTTCCCGATCAATGATTTGGACCTGTCAAAATATGTTGCCCACAAGAATAGCCCATTTTCCCCCCATTACGAGTTGTATGCAATCAGCTGTCATTATGGAGGATTGGGAGGAGGTCATTATACAGCATTTGTTCGTGTAAGTACCTCTTTATAG 2253 0.4252 MDSLFSDHNDYFSDFDSRPQRRFVREEEPQLENEPLYLVLYRWWKEVQGDADQVERVLYTVSTNSDSESDSEIVLQLRKEDNREETMDSQMGSSGRQYALVPEGLWLRALKRSCRMGSHNAFTSRFFAPHTSCILAELMRRYWCSDNSNAVRDFGSPFYADDCLPDLFSLQVRMFVSWETNSLVAKISQKENTVDAYMKACNIFGSEYAVHILDFSGQTTQFFIDDNEYSGQLEKGVLLELQVYGLSDTMKVNGSNEMFVDRSTVGCSYHSGSVMMNGTTHNVNSNELLAFLLDGLHEDLNRVKRKPYHEVKDEDGRPDEEVAEEYWHNHLARNDSIIVDLCQGQFRSTLVCPVCKKVSITFDPFMHLSLPLPSATMRTIILTVLSTNGIALPSTFTITLPKSGLLKDLIEALGDACSLRDDEMLLVAEIYRYRICRLLEEPSDSLALIRDEDKLVAYRLPKDEAGPFVVFMHQQVTKECSFGREKLVESLFGIPIVARLPNVSCGYDIRREFLKLINPFLMPSEDFLDEHDNDIEVSKDKELSDATGSACLEGDSDSDLEADFRFYLTARLGMENVEIEMDKPLPLTLLPKKLEVSVLWSDKMIAKYDTCLLSSLPEVFKPNLFAKRTQESVSVYKCLEAFLKEEPLGPDDKWFCPKCKKPQQATKKLDLWRLPEILVVHLKRFSFSRYFKNKLETFVDFPINDLDLSKYVAHKNSPFSPHYELYAISCHYGGLGGGHYTAFVRVSTSL 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0852 750 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 723 740 IPR018200 GO:0004843|GO:0006511
Lele06g0852 750 Pfam Ubiquitin carboxyl-terminal hydrolase 284 745 IPR001394 GO:0004843|GO:0016579
Lele06g0852 750 SUPERFAMILY Cysteine proteinases 284 746 IPR038765 -
Lele06g0852 750 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 284 745 - -
Lele06g0852 750 Gene3D Cysteine proteinases 475 749 - -
Lele06g0852 750 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 149 750 IPR028889 -
Lele06g0852 750 Gene3D Cysteine proteinases 255 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0852 Lele-ChrLele06 5280699 5287225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0852 623 745 Miscellaneous Gene Families AT4G31670 32.540 4.27e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0852 06 5280699 5287225 Lele07g1028 07 6186971 6193829 hybridization
Lele06g0852 06 5280699 5287225 Lele08g0842 08 5294732 5302204 hybridization