Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0837 ATGGCCTCCCTCCCTTCTCTCTGCTATGGTGTTCCCCCCTCCCGCCCCTTCTTCTTCCTCTCCCTTCTCTTCCTCTCCCTTCCATTCCACTCCGCCCAGAAATTCCCTTCCTCTTCCGGCTCCAGTCAGATTAACTCCAACTCTATTCTCGTCGCTCTTCTCGATTCCCATTATACTGAGCTCGCTGAGCTTGTGGAGAAAGCTCTCCTCCTCCAGAAACTCGAGGATACCGTCGGCGCCAACAATATCACCATCTTTGCCCCGCGGAATGAAGCTCTGGAGCGTCAGCTCGATCCCGAGTTTAAGCGTTTCCTGCTTGAACCTGGGAATCTCAGGTCCTTGCAGACCCTTCTCATGTATCACATTGTTCCCAGACGAATCGGTTCCAATGACTGGCCCTCTGAGAGTTCTGGAGCCGTTCCGCACAAGACCTTATGCAATGACCATGTGCATTTGGCCAGCAAGGGTCCTGCTAGTAAGGTTGTTGGTTTGGCCGAGATCGTTCGCCCCGACGACGTCGTTCGTCCTGACGGTGTGATTCACGGCATTGAGCGCCTTTTGGTCCCGCGATCGGTGCAGGAGGATTTCAATCGCCGACGGAATTTGCGGGACATATCGGCGGTGATCCCAGAGGGTGCGCCGGAGGTGGATCCCCGAACCCACCGGTTGAAGAAACCCGCTCCAGTACCCGCCGGAGCTCCTCCTGTGTTGCCCATTTACGACGCCATGGCCCCCGGTCCTTCACTCGCTCCCGCACCGGCACCCGGACCCGGTGGTCCTCATGGTCACTTCAATGGTATGCGTCAGGTGAAAGACTTCATTCACACTCTCTTGCATTACGGTGGCTACAATGAAATGGCGGATATTCTGGTTAACTTGACATCTTTGGCCACCGAAATGGGAAGGTTAGTCTCAGAGGGTTATGTCCTGACGGTGTTGGCTCCCAACGACGAGGCCATGGCGAAGCTAACCACAGACCAATTGAGTGAACCGGGTGCACCGGAGCAAATAATATACTACCATATCATACCGGAGTATCAGACGGAGGAGAGTATGTACAATGCTGTGAGAAGGTTTGGGAAAGTTCGGTACGACACACTGCGGTTGCCACACAAGGTTGTGGCTCAGGAGGCTGATGGGTCTGTGAAGTTTGGGCAAGGTGAAGGGTCTGCATATCTGTTTGATCCTGATATATATACAGATGGGAGAATTTCAGTACAGGGTATTGACGGAGTTCTTTTCCCGGCCGAAGAGGAGCCAAAGACTGAGCGAAAAACAGTACCAGTCGTCAAAGTTGCCACCAAACCAAGGAGAGGGAAGTTGCTGGAAGTAGCTTGTAGCGTGTTTGGAGCTTTTGGAGGAGCCTGCTAA 1371 0.5361 MASLPSLCYGVPPSRPFFFLSLLFLSLPFHSAQKFPSSSGSSQINSNSILVALLDSHYTELAELVEKALLLQKLEDTVGANNITIFAPRNEALERQLDPEFKRFLLEPGNLRSLQTLLMYHIVPRRIGSNDWPSESSGAVPHKTLCNDHVHLASKGPASKVVGLAEIVRPDDVVRPDGVIHGIERLLVPRSVQEDFNRRRNLRDISAVIPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHGHFNGMRQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGEGSAYLFDPDIYTDGRISVQGIDGVLFPAEEEPKTERKTVPVVKVATKPRRGKLLEVACSVFGAFGGAC 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0837 456 FunFam Fasciclin-like arabinogalactan protein 16 265 416 - -
Lele08g0837 456 ProSiteProfiles FAS1/BIgH3 domain profile. 45 187 IPR000782 -
Lele08g0837 456 Gene3D FAS1 domain 289 416 IPR036378 -
Lele08g0837 456 Pfam Fasciclin domain 57 189 IPR000782 -
Lele08g0837 456 Pfam Fasciclin domain 295 415 IPR000782 -
Lele08g0837 456 Gene3D FAS1 domain 49 190 IPR036378 -
Lele08g0837 456 SMART fasc_3 311 416 IPR000782 -
Lele08g0837 456 SMART fasc_3 84 190 IPR000782 -
Lele08g0837 456 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 30 456 IPR044654 -
Lele08g0837 456 SUPERFAMILY FAS1 domain 249 416 IPR036378 -
Lele08g0837 456 ProSiteProfiles FAS1/BIgH3 domain profile. 270 398 IPR000782 -
Lele08g0837 456 SUPERFAMILY FAS1 domain 44 190 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0837 Lele-ChrLele08 5264607 5267235 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0837 08 5264607 5267235 Lele08g0837 08 5264607 5267235 ECH
Lele05g0988 05 6104724 6107372 Lele08g0837 08 5264607 5267235 hybridization
Lele06g0846 06 5252624 5255267 Lele08g0837 08 5264607 5267235 hybridization