Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0988 ATGGCCCCCCTCCCTTCTCCCTGCTATGGTGTTCCCTCCTCCCGCCCCTTCTTCTTCCTCTTCCTTCTCTTCCTCTCCCTTCTTCCCTTCCACTCCGCCCAGAAATTCCCTTCTTCTTCCGGGTCCGGTCAGATTAACTCCAACTCTATTCTCGTCGCTCTTCTCGATTCCCATTATACTGAGCTCGCTGAGCTTGTCGAGAAAGCTCTTCTCCTCCAGAAACTTGAGGATACCGTCGGCGCCAACAATATCACCATCTTCGCCCCCCGAAATGAAGCTCTGGAGCGTCAGCTCGACCCCGAGTTTAAGCGATTCCTGCTTGAACCCGGGAATCTCAGGTCCTTACAGACCCTTCTCATGTATCACATTGTGCCCAGACGAATCGGTTCCAATGACTGGCCCGCTGAGAGTTCTGGAGCCGTTACGCATAAGACCTTATGCAATGACCACGTGCATTTGGCCAGCAAGGGTCCTGCTAATAAAGTTATTGGTTTGGCCGAGATCGTTCGCCCCGACGACGTCGTTCGTCCTGATGGTGTGATTCACGGCATTGAGCGGCTTTTGGTCCCGCGATCGGTGCAGGAGGATTTCAATCGCCGAAGGAATTTGCGGGACATATCGGCGGTGATCCCGGAGGGTGCGCCGGAGGTGGATCCCCGAACCCACCGGTTGAAGAAACCCTCTCCAGTACCCGCCGGGGCTCCTCCTGTGTTGCCCATTTACGATGCCATGGCCCCGGGTCCTTCACTCGCTCCCGCACCGGCACCCGGACCCGGTGGTCCTCATGGTCACTTCAATGGTATGCGTCAGGTGAAAGACTTCATTCACACTCTGTTGCATTACGGTGGCTACAATGAAATGGCAGATATTCTGGTTAACTTGACATCTTTGGCTACCGAAATGGGAAGGTTAGTCTCAGAGGGTTATGTCCTGACGGTGTTGGCTCCCAATGACGAGGCCATGGCGAAGCTAACCACAGACCAATTGAGTGAACCGGGTGCACCGGAGCAAATAATATACTACCATATCATACCGGAGTATCAGACGGAGGAGAGTATGTACAATGCTGTGAGGAGGTTTGGCAAAGTTCGGTACGACACACTGCGGTTGCCACACAAGGTTGTGGCTCAGGAGGCTGATGGGTCTGTGAAGTTTGGGCAAGGTGAAGGGTCCGCATATCTGTTTGATCCTGATATATATACAGATGGGAGAATTTCAGTACAGGGTATTGACGGAGTTCTTTTCCCGGCGGAAGAGGAGCCAAAGACTGAGCGAAAAGCAGTACCTGTCGTTAAAGTTGCCACCAAACCAAGGAGAGGGAAGTTGCTTGAAGTAGCTTGTAGCATGTTTGGAGCTTTTGGAGGAGCCTGCTAA 1374 0.5306 MAPLPSPCYGVPSSRPFFFLFLLFLSLLPFHSAQKFPSSSGSGQINSNSILVALLDSHYTELAELVEKALLLQKLEDTVGANNITIFAPRNEALERQLDPEFKRFLLEPGNLRSLQTLLMYHIVPRRIGSNDWPAESSGAVTHKTLCNDHVHLASKGPANKVIGLAEIVRPDDVVRPDGVIHGIERLLVPRSVQEDFNRRRNLRDISAVIPEGAPEVDPRTHRLKKPSPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHGHFNGMRQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGEGSAYLFDPDIYTDGRISVQGIDGVLFPAEEEPKTERKAVPVVKVATKPRRGKLLEVACSMFGAFGGAC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0988 457 ProSiteProfiles FAS1/BIgH3 domain profile. 271 399 IPR000782 -
Lele05g0988 457 Pfam Fasciclin domain 58 190 IPR000782 -
Lele05g0988 457 Pfam Fasciclin domain 296 416 IPR000782 -
Lele05g0988 457 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 20 457 IPR044654 -
Lele05g0988 457 SUPERFAMILY FAS1 domain 47 191 IPR036378 -
Lele05g0988 457 Gene3D FAS1 domain 290 417 IPR036378 -
Lele05g0988 457 ProSiteProfiles FAS1/BIgH3 domain profile. 46 188 IPR000782 -
Lele05g0988 457 SMART fasc_3 85 191 IPR000782 -
Lele05g0988 457 SMART fasc_3 312 417 IPR000782 -
Lele05g0988 457 FunFam Fasciclin-like arabinogalactan protein 16 266 417 - -
Lele05g0988 457 SUPERFAMILY FAS1 domain 250 417 IPR036378 -
Lele05g0988 457 Gene3D FAS1 domain 51 191 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0988 Lele-ChrLele05 6104724 6107372 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0988 05 6104724 6107372 Lele05g0988 05 6104724 6107372 ECH
Lele05g0988 05 6104724 6107372 Lele07g1025 07 6164771 6167417 hybridization
Lele05g0988 05 6104724 6107372 Lele08g0837 08 5264607 5267235 hybridization